[perl #120824] Bleadperl v5.19.6-188-g892089c breaks RVOSA/Bio-Phylo-0.56.tar.gz

# New Ticket Created by  (Andreas J. Koenig) 
# Please include the string:  [perl #120824]
# in the subject line of all future correspondence about this issue. 
# <URL: https://rt.perl.org/Ticket/Display.html?id=120824 >


git bisect
----------
commit 892089cd68f447dda17eb023010cd1dfb14ea0a5
Author: Graham Knop <haarg@haarg.org>
Date:   Wed Dec 4 05:54:02 2013 -0500

    make base.pm more strict about nonexistent module check

diagnostics
-----------
Note that the failure is only reproducable when both XML::LibXML and
XML::Twig are installed:

http://www.cpantesters.org/cpan/report/e008541c-675f-11e3-8dda-f464797cd0ea

perl -V
-------
Summary of my perl5 (revision 5 version 19 subversion 7) configuration:
  Commit id: 892089cd68f447dda17eb023010cd1dfb14ea0a5
  Platform:
    osname=linux, osvers=3.10-3-amd64, archname=x86_64-linux
    uname='linux k83 3.10-3-amd64 #1 smp debian 3.10.11-1 (2013-09-10) x86_64 gnulinux '
    config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/perl/v5.19.6-188-g892089c/165a -Dmyhostname=k83 -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Uuseithreads -Uuselongdouble -DDEBUGGING=-g'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=undef, usemultiplicity=undef
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
    optimize='-O2 -g',
    cppflags='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
    ccversion='', gccversion='4.8.2', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
    libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
    libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
    perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
    libc=, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version='2.17'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
    cccdlflags='-fPIC', lddlflags='-shared -O2 -g -L/usr/local/lib -fstack-protector'


Characteristics of this binary (from libperl): 
  Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
                        PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
                        PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
                        PERL_USE_DEVEL USE_64_BIT_ALL USE_64_BIT_INT
                        USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
                        USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_PERLIO
                        USE_PERL_ATOF
  Built under linux
  Compiled at Dec 19 2013 09:37:03
  @INC:
    /home/sand/src/perl/repoperls/installed-perls/perl/v5.19.6-188-g892089c/165a/lib/site_perl/5.19.7/x86_64-linux
    /home/sand/src/perl/repoperls/installed-perls/perl/v5.19.6-188-g892089c/165a/lib/site_perl/5.19.7
    /home/sand/src/perl/repoperls/installed-perls/perl/v5.19.6-188-g892089c/165a/lib/5.19.7/x86_64-linux
    /home/sand/src/perl/repoperls/installed-perls/perl/v5.19.6-188-g892089c/165a/lib/5.19.7
    .


-- 
andreas

• [perl #120824] Bleadperl v5.19.6-188-g892089c breaks RVOSA/Bio-Phylo-0.56.tar.gz by perlbug-followup
• Re: [perl #120824] Bleadperl v5.19.6-188-g892089c breaks RVOSA/Bio-Phylo-0.56.tar.gz by Andreas Koenig
• Re: [perl #120824] Bleadperl v5.19.6-188-g892089c breaks RVOSA/Bio-Phylo-0.56.tar.gz by Andreas Koenig