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FAIL bioperl-run-1.4 x86_64-linux-thread-multi-ld 2.6.22.10
From:
imacat
Date:
January 8, 2008 20:24
Subject:
FAIL bioperl-run-1.4 x86_64-linux-thread-multi-ld 2.6.22.10
This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible. See
http://testers.cpan.org/
Please cc any replies to cpan-testers@perl.org to keep other
test volunteers informed and to prevent any duplicate effort.
--
Dear Ewan Birney,
This is a computer-generated report for bioperl-run-1.4
on perl-5.10.0, created automatically by CPAN-Reporter-1.0601
and sent to the CPAN Testers mailing list.
If you have received this email directly, it is because the person testing
your distribution chose to send a copy to your CPAN email address; there
may be a delay before the official report is received and processed
by CPAN Testers.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems with your distribution. If these results are
not what you expect or if you would like to learn how to avoid FAIL
reports for missing dependencies, unsupported operating systems, etc.,
please consult "Notes for CPAN Authors" on the CPAN Testers Wiki:
http://cpantest.grango.org
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
[none provided]
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 /opt/perl/5.10.0/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/Analysis_soap.............SOAP::Lite not installed. Skipping some tests.
ok
t/AnalysisFactory_soap......SOAP::Lite not installed. Skipping some tests.
ok
t/Blat......................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Alignment/Blat.pm line 60.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Alignment/Blat.pm line 60.
Compilation failed in require at t/Blat.t line 24.
BEGIN failed--compilation aborted at t/Blat.t line 24.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 11/11 subtests
t/Clustalw..................Can't locate Bio/Seq.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm line 321.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm line 321.
Compilation failed in require at t/Clustalw.t line 17.
BEGIN failed--compilation aborted at t/Clustalw.t line 17.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 9/9 subtests
t/Coil......................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Coil.pm line 69.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Coil.pm line 69.
Compilation failed in require at t/Coil.t line 22.
BEGIN failed--compilation aborted at t/Coil.t line 22.
Dubious, test returned 2 (wstat 512, 0x200)
All 4 subtests passed
(less 4 skipped subtests: 0 okay)
t/Consense..................IO::String not installed. Skipping tests 1 to 7.
ok
t/DBA.......................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Alignment/DBA.pm line 81.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Alignment/DBA.pm line 81.
Compilation failed in require at t/DBA.t line 16.
BEGIN failed--compilation aborted at t/DBA.t line 16.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 15/15 subtests
t/DrawGram..................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 85.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 85.
Compilation failed in require at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm line 76.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm line 76.
Compilation failed in require at t/DrawGram.t line 20.
BEGIN failed--compilation aborted at t/DrawGram.t line 20.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 4/4 subtests
t/DrawTree..................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 85.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm line 85.
Compilation failed in require at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm line 76.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm line 76.
Compilation failed in require at t/DrawTree.t line 20.
BEGIN failed--compilation aborted at t/DrawTree.t line 20.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 4/4 subtests
t/EMBOSS....................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Factory/EMBOSS.pm line 102.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Factory/EMBOSS.pm line 102.
Compilation failed in require at t/EMBOSS.t line 23.
BEGIN failed--compilation aborted at t/EMBOSS.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 30/30 subtests
t/Eponine...................Can't locate Bio/Tools/Eponine.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Eponine.pm line 91.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Eponine.pm line 91.
Compilation failed in require at t/Eponine.t line 25.
BEGIN failed--compilation aborted at t/Eponine.t line 25.
Dubious, test returned 2 (wstat 512, 0x200)
All 5 subtests passed
t/FootPrinter...............Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/FootPrinter.pm line 164.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/FootPrinter.pm line 164.
Compilation failed in require at t/FootPrinter.t line 16.
BEGIN failed--compilation aborted at t/FootPrinter.t line 16.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 18/18 subtests
t/Genewise..................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Genewise.pm line 92.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Genewise.pm line 92.
Compilation failed in require at t/Genewise.t line 16.
BEGIN failed--compilation aborted at t/Genewise.t line 16.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 13/13 subtests
t/Genscan...................Can't locate Bio/Seq.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Genscan.pm line 66.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Genscan.pm line 66.
Compilation failed in require at t/Genscan.t line 23.
BEGIN failed--compilation aborted at t/Genscan.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 4 subtests passed
(less 4 skipped subtests: 0 okay)
t/Hmmer.....................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Hmmer.pm line 91.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Hmmer.pm line 91.
Compilation failed in require at t/Hmmer.t line 24.
BEGIN failed--compilation aborted at t/Hmmer.t line 24.
Dubious, test returned 2 (wstat 512, 0x200)
All 17 subtests passed
(less 17 skipped subtests: 0 okay)
t/Hmmpfam...................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Hmmpfam.pm line 85.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Hmmpfam.pm line 85.
Compilation failed in require at t/Hmmpfam.t line 23.
BEGIN failed--compilation aborted at t/Hmmpfam.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 8 subtests passed
(less 8 skipped subtests: 0 okay)
t/Lagan.....................Can't locate Bio/AlignIO.pm in @INC (@INC contains: /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at t/Lagan.t line 6.
BEGIN failed--compilation aborted at t/Lagan.t line 6.
Dubious, test returned 2 (wstat 512, 0x200)
No subtests run
t/Mdust.....................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Mdust.pm line 87.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Mdust.pm line 87.
Compilation failed in require at t/Mdust.t line 17.
BEGIN failed--compilation aborted at t/Mdust.t line 17.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 2/2 subtests
t/Molphy....................IO::String not installed. Skipping tests 1 to 7.
ok
t/Neighbor..................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 211.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 211.
Compilation failed in require at t/Neighbor.t line 19.
BEGIN failed--compilation aborted at t/Neighbor.t line 19.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 14/14 subtests
t/PAML......................IO::String not installed. Skipping tests 1 to 17.
ok
t/Pise......................Need XML::Parser::PerlSA to run test, skipping test
ok
t/Primate...................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Primate.pm line 73.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Primate.pm line 73.
Compilation failed in require at t/Primate.t line 43.
BEGIN failed--compilation aborted at t/Primate.t line 43.
Dubious, test returned 2 (wstat 512, 0x200)
All 6 subtests passed
(less 6 skipped subtests: 0 okay)
t/Primer3...................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t .. /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Primer3.pm line 132.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Primer3.pm line 132.
Compilation failed in require at t/Primer3.t line 27.
BEGIN failed--compilation aborted at t/Primer3.t line 27.
Dubious, test returned 2 (wstat 512, 0x200)
All 7 subtests passed
(less 7 skipped subtests: 0 okay)
t/Prints....................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Prints.pm line 63.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Prints.pm line 63.
Compilation failed in require at t/Prints.t line 23.
BEGIN failed--compilation aborted at t/Prints.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 5 subtests passed
(less 5 skipped subtests: 0 okay)
t/Profile...................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Profile.pm line 65.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Profile.pm line 65.
Compilation failed in require at t/Profile.t line 23.
BEGIN failed--compilation aborted at t/Profile.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 5 subtests passed
(less 5 skipped subtests: 0 okay)
t/Promoterwise..............Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Promoterwise.pm line 87.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Promoterwise.pm line 87.
Compilation failed in require at t/Promoterwise.t line 16.
BEGIN failed--compilation aborted at t/Promoterwise.t line 16.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 8/8 subtests
t/ProtDist..................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 211.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm line 211.
Compilation failed in require at t/ProtDist.t line 20.
BEGIN failed--compilation aborted at t/ProtDist.t line 20.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 11/11 subtests
t/ProtPars..................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm line 130.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm line 130.
Compilation failed in require at t/ProtPars.t line 20.
BEGIN failed--compilation aborted at t/ProtPars.t line 20.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 7/7 subtests
t/Pseudowise................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Pseudowise.pm line 67.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Pseudowise.pm line 67.
Compilation failed in require at t/Pseudowise.t line 23.
BEGIN failed--compilation aborted at t/Pseudowise.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 13 subtests passed
(less 13 skipped subtests: 0 okay)
t/RepeatMasker..............Can't locate Bio/SeqFeature/Generic.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/RepeatMasker.pm line 85.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/RepeatMasker.pm line 85.
Compilation failed in require at t/RepeatMasker.t line 16.
BEGIN failed--compilation aborted at t/RepeatMasker.t line 16.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 8/8 subtests
t/Seg.......................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Seg.pm line 65.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Seg.pm line 65.
Compilation failed in require at t/Seg.t line 23.
BEGIN failed--compilation aborted at t/Seg.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 6 subtests passed
(less 6 skipped subtests: 0 okay)
t/SeqBoot...................Can't locate Bio/SimpleAlign.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm line 156.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm line 156.
Compilation failed in require at t/SeqBoot.t line 20.
BEGIN failed--compilation aborted at t/SeqBoot.t line 20.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 6/6 subtests
t/Signalp...................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Signalp.pm line 66.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Signalp.pm line 66.
Compilation failed in require at t/Signalp.t line 23.
BEGIN failed--compilation aborted at t/Signalp.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 5 subtests passed
(less 5 skipped subtests: 0 okay)
t/Sim4......................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Alignment/Sim4.pm line 89.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Alignment/Sim4.pm line 89.
Compilation failed in require at t/Sim4.t line 16.
BEGIN failed--compilation aborted at t/Sim4.t line 16.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 20/20 subtests
t/StandAloneFasta...........Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm line 116.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm line 116.
Compilation failed in require at t/StandAloneFasta.t line 24.
BEGIN failed--compilation aborted at t/StandAloneFasta.t line 24.
Dubious, test returned 2 (wstat 512, 0x200)
All 15 subtests passed
(less 15 skipped subtests: 0 okay)
t/TCoffee...................Can't locate Bio/Seq.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Alignment/TCoffee.pm line 500.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Alignment/TCoffee.pm line 500.
Compilation failed in require at t/TCoffee.t line 20.
BEGIN failed--compilation aborted at t/TCoffee.t line 20.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 22/22 subtests
t/Tmhmm.....................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Tmhmm.pm line 69.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Tmhmm.pm line 69.
Compilation failed in require at t/Tmhmm.t line 23.
BEGIN failed--compilation aborted at t/Tmhmm.t line 23.
Dubious, test returned 2 (wstat 512, 0x200)
All 5 subtests passed
(less 5 skipped subtests: 0 okay)
t/TribeMCL..................Can't locate Bio/SeqIO.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/TribeMCL.pm line 153.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/TribeMCL.pm line 153.
Compilation failed in require at t/TribeMCL.t line 17.
BEGIN failed--compilation aborted at t/TribeMCL.t line 17.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 22/22 subtests
t/Vista.....................Can't locate Bio/Root/Root.pm in @INC (@INC contains: t /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/arch /home/imacat/lib/perl5 /opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/5.10.0 /opt/perl/5.10.0/lib/site_perl/5.10.0/x86_64-linux-thread-multi-ld /opt/perl/5.10.0/lib/site_perl/5.10.0 .) at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Vista.pm line 125.
BEGIN failed--compilation aborted at /home/imacat/.cpan/build/bioperl-run-1.4-gKh5g0/blib/lib/Bio/Tools/Run/Vista.pm line 125.
Compilation failed in require at t/Vista.t line 26.
BEGIN failed--compilation aborted at t/Vista.t line 26.
Dubious, test returned 2 (wstat 512, 0x200)
All 5 subtests passed
Test Summary Report
-------------------
t/Blat.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 11 tests but ran 0.
t/Clustalw.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/Coil.t (Wstat: 512 Tests: 4 Failed: 0)
Non-zero exit status: 2
t/DBA.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 15 tests but ran 0.
t/DrawGram.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 4 tests but ran 0.
t/DrawTree.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 4 tests but ran 0.
t/EMBOSS.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 30 tests but ran 0.
t/Eponine.t (Wstat: 512 Tests: 5 Failed: 0)
Non-zero exit status: 2
t/FootPrinter.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 18 tests but ran 0.
t/Genewise.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 13 tests but ran 0.
t/Genscan.t (Wstat: 512 Tests: 4 Failed: 0)
Non-zero exit status: 2
t/Hmmer.t (Wstat: 512 Tests: 17 Failed: 0)
Non-zero exit status: 2
t/Hmmpfam.t (Wstat: 512 Tests: 8 Failed: 0)
Non-zero exit status: 2
t/Lagan.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/Mdust.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 2 tests but ran 0.
t/Neighbor.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 14 tests but ran 0.
t/Primate.t (Wstat: 512 Tests: 6 Failed: 0)
Non-zero exit status: 2
t/Primer3.t (Wstat: 512 Tests: 7 Failed: 0)
Non-zero exit status: 2
t/Prints.t (Wstat: 512 Tests: 5 Failed: 0)
Non-zero exit status: 2
t/Profile.t (Wstat: 512 Tests: 5 Failed: 0)
Non-zero exit status: 2
t/Promoterwise.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 8 tests but ran 0.
t/ProtDist.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 11 tests but ran 0.
t/ProtPars.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 7 tests but ran 0.
t/Pseudowise.t (Wstat: 512 Tests: 13 Failed: 0)
Non-zero exit status: 2
t/RepeatMasker.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 8 tests but ran 0.
t/Seg.t (Wstat: 512 Tests: 6 Failed: 0)
Non-zero exit status: 2
t/SeqBoot.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 6 tests but ran 0.
t/Signalp.t (Wstat: 512 Tests: 5 Failed: 0)
Non-zero exit status: 2
t/Sim4.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 20 tests but ran 0.
t/StandAloneFasta.t (Wstat: 512 Tests: 15 Failed: 0)
Non-zero exit status: 2
t/TCoffee.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 22 tests but ran 0.
t/Tmhmm.t (Wstat: 512 Tests: 5 Failed: 0)
Non-zero exit status: 2
t/TribeMCL.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 22 tests but ran 0.
t/Vista.t (Wstat: 512 Tests: 5 Failed: 0)
Non-zero exit status: 2
Files=40, Tests=176, 1 wallclock secs ( 0.07 usr 0.03 sys + 0.82 cusr 0.20 csys = 1.12 CPU)
Result: FAIL
Failed 34/40 test programs. 0/176 subtests failed.
make: *** [test_dynamic] Error 2
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
No requirements found
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = zh_TW
LANGUAGE = zh_TW
LC_ALL = zh_TW
LC_COLLATE = zh_TW
LC_CTYPE = zh_TW
LC_MESSAGES = zh_TW
LC_MONETARY = zh_TW
LC_NUMERIC = zh_TW
LC_TIME = zh_TW
PATH = /home/imacat/bin:/bin:/usr/bin:/opt/java/bin:/usr/local/bin
PERL5LIB = /home/imacat/lib/perl5
PERL5_CPANPLUS_IS_RUNNING = 29948
PERL5_CPAN_IS_RUNNING = 29948
SHELL = /bin/zsh
TERM = xterm
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl/5.10.0/bin/perl
$UID/$EUID = 1000 / 1000
$GID = 100 0 4 6 20 24 25 29 34 38 40 44 46 50 100 104 1000
$EGID = 100 0 4 6 20 24 25 29 34 38 40 44 46 50 100 104 1000
Perl module toolchain versions installed:
Module Have
------------------- ---------
CPAN 1.9205
Cwd 3.2501
ExtUtils::CBuilder 0.21
ExtUtils::Command 1.13
ExtUtils::Install 1.44
ExtUtils::MakeMaker 6.42
ExtUtils::Manifest 1.51_01
ExtUtils::ParseXS 2.18_02
File::Spec 3.2501
Module::Build 0.2808_01
Module::Signature 0.55
Test::Harness 3.06
Test::More 0.74
YAML 0.66
YAML::Syck n/a
version 0.74
--
Summary of my perl5 (revision 5 version 10 subversion 0) configuration:
Platform:
osname=linux, osvers=2.6.22.10, archname=x86_64-linux-thread-multi-ld
uname='linux rinse 2.6.22.10 #1 smp tue nov 20 02:36:22 cst 2007 x86_64 gnulinux '
config_args='-d -Dusethreads -Dcc=gcc -Duselongdouble -Doptimize=-g -O3 -Duse64bitint -Duse64bitall -Dprefix=/opt/perl/5.10.0 -Dd_dosuid -Dinc_version_list=none -Duseshrplib=true -Dcf_email=imacat@mail.imacat.idv.tw'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=define
usemymalloc=n, bincompat5005=undef
Compiler:
cc='gcc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-g -O3',
cppflags='-D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include'
ccversion='', gccversion='4.1.2 20061115 (prerelease) (Debian 4.1.1-21)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='long double', nvsize=16, Off_t='off_t', lseeksize=8
alignbytes=16, prototype=define
Linker and Libraries:
ld='gcc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib /lib64 /usr/lib64
libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lpthread -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=/lib/libc-2.3.6.so, so=so, useshrplib=true, libperl=libperl.so
gnulibc_version='2.3.6'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E -Wl,-rpath,/opt/perl/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld/CORE'
cccdlflags='-fPIC', lddlflags='-shared -g -O3 -L/usr/local/lib'
-
FAIL bioperl-run-1.4 x86_64-linux-thread-multi-ld 2.6.22.10
by imacat