PASS Bio-NEXUS-0.69b i686-linux-thread-multi-64int-ld 2.6.24-16-generic

This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible.  See
http://testers.cpan.org/


--
Dear Thomas Hladish,
    
This is a computer-generated report for Bio-NEXUS-0.69b
on perl 5.10.0, created by CPAN-Reporter-1.16. 

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester: 

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from './Build test':

t/_perl_module-loading..................ok
t/_perl_perlpod.........................skipped: Test::Pod required for testing POD
t/_perl_podcoverage.....................skipped: Test::Pod::Coverage required for testing POD coverage
t/assumptionsblock_options..............ok
t/assumptionsblock_wtset-scores.........ok
t/block_link-and-title..................ok
t/charactersblock_methods-01............ok
t/charactersblock_methods-02............ok
t/matrix_character-state-frequency......ok
t/matrix_charactersblock-interleave.....ok
t/matrix_historyblock-probab-distrib....ok
t/matrix_polymorphic-and-uncertain......ok
t/nexus_add-otu-clone...................skipped: Test::Deep not found
t/nexus_block-level-commands............ok
t/nexus_taxa-labels-quoted..............ok
t/nexus_taxa-labels-squarebrackets......ok
t/nexus_taxa-labels.....................ok
t/nexus_wrong_format....................Use of uninitialized value $_ in concatenation (.) or string at /home/david/.cpan/build/Bio-NEXUS-0.69-OJhnH6/blib/lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at /home/david/.cpan/build/Bio-NEXUS-0.69-OJhnH6/blib/lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at /home/david/.cpan/build/Bio-NEXUS-0.69-OJhnH6/blib/lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at /home/david/.cpan/build/Bio-NEXUS-0.69-OJhnH6/blib/lib/Bio/NEXUS/Util/Exceptions.pm line 64.
ok
t/nhxcmd_parsing........................ok
t/notesblock_methods....................skipped: The notes block implementation is not complete
t/tree_equals...........................ok
t/tree_methods-01.......................ok
t/tree_methods-02.......................ok
t/tree_parsing..........................ok
t/tree_support-values...................ok
t/treesblock_methods....................Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
ok
t/uncat_clone_methods...................skipped: Clone::PP not installed
t/uncat_datablock_clustalw..............ok
t/uncat_equals_methods..................ok
t/uncat_excessive_whitespace............ok
t/uncat_ntax-nchar-dimensions...........Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
ok
t/uncat_object-file-equality............ok
t/uncat_shared-commands.................ok
t/uncat_todo............................ok
t/uncat_write...........................ok
All tests successful.

Test Summary Report
-------------------
t/nexus_wrong_format                (Wstat: 0 Tests: 1 Failed: 0)
  TODO passed:   1
t/uncat_ntax-nchar-dimensions       (Wstat: 0 Tests: 4 Failed: 0)
  TODO passed:   3
Files=35, Tests=377,  5 wallclock secs ( 0.05 usr  0.24 sys +  2.53 cusr  1.87 csys =  4.69 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module     Need Have
    ---------- ---- ----
    Test::More 0    0.80

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    LANG = en_US.UTF-8
    LD_LIBRARY_PATH = /home/david/opt/subversion/lib
    PATH = .:/home/david/bin:/home/david/git/utility-scripts:/home/david/perl/current/bin:.:/home/david/bin:/home/david/git/utility-scripts:/home/david/perl/current/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
    PERL5LIB = 
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 5985
    PERL5_CPAN_IS_RUNNING = 5985
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 17668,5985
    PERL_CR_SMOKER_CURRENT = Bio-NEXUS-0.69b
    PERL_MM_USE_DEFAULT = 1
    SHELL = /bin/bash
    TERM = screen

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /home/david/perl/5.10.0-threads/bin/perl
    $UID/$EUID = 1000 / 1000
    $GID = 1000 4 20 24 25 29 30 44 46 107 115 116 1000
    $EGID = 1000 4 20 24 25 29 30 44 46 107 115 116 1000

Perl module toolchain versions installed:

    Module              Have     
    ------------------- ---------
    CPAN                1.92_63  
    Cwd                 3.2701   
    ExtUtils::CBuilder  0.23     
    ExtUtils::Command   1.13     
    ExtUtils::Install   1.45     
    ExtUtils::MakeMaker 6.44     
    ExtUtils::Manifest  1.51_01  
    ExtUtils::ParseXS   2.18_02  
    File::Spec          3.2701   
    Module::Build       0.2808_01
    Module::Signature   n/a      
    Test::Harness       3.12     
    Test::More          0.80     
    YAML                0.66     
    YAML::Syck          1.05     
    version             0.74     


--

Summary of my perl5 (revision 5 version 10 subversion 0) configuration:
  Platform:
    osname=linux, osvers=2.6.24-16-generic, archname=i686-linux-thread-multi-64int-ld
    uname='linux griffon 2.6.24-16-generic #1 smp thu apr 10 13:23:42 utc 2008 i686 gnulinux '
    config_args='-de -Uversiononly -Dusedevel -Dusemorebits -Dprefix=/home/david/perl/5.10.0-threads -Dmydomain=.hyperbolic.net -Dcf_email=dagolden@cpan.org -Dperladmin=dagolden@cpan.org -Dcc=gcc -Dusethreads'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=define, usemultiplicity=define
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=define, use64bitall=undef, uselongdouble=define
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='gcc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
    optimize='-O2',
    cppflags='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -I/usr/local/include'
    ccversion='', gccversion='4.2.3 (Ubuntu 4.2.3-2ubuntu7)', gccosandvers=''
    intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
    ivtype='long long', ivsize=8, nvtype='long double', nvsize=12, Off_t='off_t', lseeksize=8
    alignbytes=4, prototype=define
  Linker and Libraries:
    ld='gcc', ldflags =' -L/usr/local/lib'
    libpth=/usr/local/lib /lib /usr/lib
    libs=-lnsl -ldb -ldl -lm -lcrypt -lutil -lpthread -lc
    perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
    libc=/lib/libc-2.7.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version='2.7'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
    cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib'

• PASS Bio-NEXUS-0.69b i686-linux-thread-multi-64int-ld 2.6.24-16-generic by DAGOLDEN