PASS Bio-MAGE-20030502.3 i686-linux-thread-multi-64int-ld 2.6.24-16-generic

This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible.  See
http://testers.cpan.org/


--
Dear Jason E. Stewart,
    
This is a computer-generated report for Bio-MAGE-20030502.3
on perl 5.8.8 patch 34066, created by CPAN-Reporter-1.1556. 

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester: 

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 /home/david/perl/5.8.x-threads/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/Array..........................ok
t/Array_package..................ok
t/ArrayDesign....................ok
t/ArrayDesign_package............ok
t/ArrayGroup.....................ok
t/ArrayManufacture...............ok
t/ArrayManufactureDeviation......ok
t/Association....................ok
t/Audit..........................ok
t/AuditAndSecurity_package.......ok
t/Base...........................Argument "val1" isn't numeric in numeric eq (==) at t/Base.t line 212.
Argument "val1" isn't numeric in numeric eq (==) at t/Base.t line 212.
Argument "val1" isn't numeric in numeric eq (==) at t/Base.t line 212.
Argument "val1" isn't numeric in numeric eq (==) at t/Base.t line 212.
ok
t/BibliographicReference.........ok
t/BioAssay.......................ok
t/BioAssay_package...............ok
t/BioAssayCreation...............ok
t/BioAssayData...................ok
t/BioAssayData_package...........ok
t/BioAssayDataCluster............ok
t/BioAssayDatum..................ok
t/BioAssayDimension..............ok
t/BioAssayMap....................ok
t/BioAssayMapping................ok
t/BioAssayTreatment..............ok
t/BioDataCube....................ok
t/BioDataTuples..................ok
t/BioDataValues..................ok
t/BioEvent.......................ok
t/BioEvent_package...............ok
t/BioMaterial....................ok
t/BioMaterial_package............ok
t/BioMaterialMeasurement.........ok
t/BioSample......................ok
t/BioSequence....................ok
t/BioSequence_package............ok
t/BioSource......................ok
t/BQS_package....................ok
t/Channel........................ok
t/CompositeCompositeMap..........ok
t/CompositeGroup.................ok
t/CompositePosition..............ok
t/CompositeSequence..............ok
t/CompositeSequenceDimension.....ok
t/Compound.......................ok
t/CompoundMeasurement............ok
t/ConcentrationUnit..............ok
t/ConfidenceIndicator............ok
t/Contact........................ok
t/Database.......................ok
t/DatabaseEntry..................ok
t/DerivedBioAssay................ok
t/DerivedBioAssayData............ok
t/DerivedSignal..................ok
t/Describable....................ok
t/Description....................ok
t/Description_package............ok
t/DesignElement..................ok
t/DesignElement_package..........ok
t/DesignElementDimension.........ok
t/DesignElementGroup.............ok
t/DesignElementMap...............ok
t/DesignElementMapping...........ok
t/DistanceUnit...................ok
t/Error..........................ok
t/ExpectedValue..................ok
t/Experiment.....................ok
t/Experiment_package.............ok
t/ExperimentalFactor.............ok
t/ExperimentDesign...............ok
t/Extendable.....................ok
t/ExternalReference..............ok
t/FactorValue....................ok
t/Failed.........................ok
t/Feature........................ok
t/FeatureDefect..................ok
t/FeatureDimension...............ok
t/FeatureExtraction..............ok
t/FeatureGroup...................ok
t/FeatureInformation.............ok
t/FeatureLocation................ok
t/FeatureReporterMap.............ok
t/Fiducial.......................ok
t/Hardware.......................ok
t/HardwareApplication............ok
t/HigherLevelAnalysis_package....ok
t/Hybridization..................ok
t/Identifiable...................ok
t/Image..........................ok
t/ImageAcquisition...............ok
t/LabeledExtract.................ok
t/MAGE_package...................ok
t/ManufactureLIMS................ok
t/ManufactureLIMSBiomaterial.....ok
t/Map............................ok
t/MassUnit.......................ok
t/MeasuredBioAssay...............ok
t/MeasuredBioAssayData...........ok
t/MeasuredSignal.................ok
t/Measurement....................ok
t/Measurement_package............ok
t/MismatchInformation............ok
t/NameValueType..................ok
t/Node...........................ok
t/NodeContents...................ok
t/NodeValue......................ok
t/OntologyEntry..................ok
t/Organization...................ok
t/Parameter......................ok
t/Parameterizable................ok
t/ParameterizableApplication.....ok
t/ParameterValue.................ok
t/Person.........................ok
t/PhysicalArrayDesign............ok
t/PhysicalBioAssay...............ok
t/Position.......................ok
t/PositionDelta..................ok
t/PresentAbsent..................ok
t/Protocol.......................ok
t/Protocol_package...............ok
t/ProtocolApplication............ok
t/PValue.........................ok
t/QuantitationType...............ok
t/QuantitationType_package.......ok
t/QuantitationTypeDimension......ok
t/QuantitationTypeMap............ok
t/QuantitationTypeMapping........ok
t/QuantityUnit...................ok
t/Ratio..........................ok
t/Reporter.......................ok
t/ReporterCompositeMap...........ok
t/ReporterDimension..............ok
t/ReporterGroup..................ok
t/ReporterPosition...............ok
t/Security.......................ok
t/SecurityGroup..................ok
t/SeqFeature.....................ok
t/SeqFeatureLocation.............ok
t/SequencePosition...............ok
t/Software.......................ok
t/SoftwareApplication............ok
t/SpecializedQuantitationType....ok
t/StandardQuantitationType.......ok
t/TemperatureUnit................ok
t/TimeUnit.......................ok
t/Transformation.................ok
t/Treatment......................ok
t/Unit...........................ok
t/VolumeUnit.....................ok
t/Zone...........................ok
t/ZoneDefect.....................ok
t/ZoneGroup......................ok
t/ZoneLayout.....................ok
All tests successful.
Files=151, Tests=16488, 62 wallclock secs ( 1.68 usr  8.41 sys + 15.83 cusr 35.25 csys = 61.17 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module      Need Have
    ----------- ---- ----
    Tie::IxHash 1.21 1.21

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    LANG = en_US.UTF-8
    LD_LIBRARY_PATH = /home/david/opt/subversion/lib
    PATH = .:/home/david/bin:/home/david/git/utility-scripts:/home/david/perl/current/bin:.:/home/david/bin:/home/david/git/utility-scripts:/home/david/perl/current/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
    PERL5LIB = 
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 13242
    PERL5_CPAN_IS_RUNNING = 13242
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 4238,13242
    PERL_CR_SMOKER_CURRENT = Bio-MAGE-20030502.3
    PERL_MM_USE_DEFAULT = 1
    SHELL = /bin/bash
    TERM = screen

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /home/david/perl/5.8.x-threads/bin/perl
    $UID/$EUID = 1000 / 1000
    $GID = 1000 4 20 24 25 29 30 44 46 107 115 116 1000
    $EGID = 1000 4 20 24 25 29 30 44 46 107 115 116 1000

Perl module toolchain versions installed:

    Module              Have   
    ------------------- -------
    CPAN                1.92_63
    Cwd                 3.2701 
    ExtUtils::CBuilder  0.23   
    ExtUtils::Command   1.14   
    ExtUtils::Install   1.50_01
    ExtUtils::MakeMaker 6.44   
    ExtUtils::Manifest  1.51_01
    ExtUtils::ParseXS   2.19   
    File::Spec          3.2701 
    Module::Build       0.2808 
    Module::Signature   n/a    
    Test::Harness       3.12   
    Test::More          0.80   
    YAML                0.66   
    YAML::Syck          1.05   
    version             n/a    


--

Summary of my perl5 (revision 5 version 8 subversion 8 patch 34066) configuration:
  Platform:
    osname=linux, osvers=2.6.24-16-generic, archname=i686-linux-thread-multi-64int-ld
    uname='linux manticore 2.6.24-16-generic #1 smp thu apr 10 13:23:42 utc 2008 i686 gnulinux '
    config_args='-de -Uversiononly -Dusedevel -Dusemorebits -Dprefix=/home/david/perl/5.8.x-threads -Dmydomain=.hyperbolic.net -Dcf_email=dagolden@cpan.org -Dperladmin=dagolden@cpan.org -Dcc=gcc -Dusethreads'
    hint=recommended, useposix=true, d_sigaction=define
    usethreads=define use5005threads=undef useithreads=define usemultiplicity=define
    useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
    use64bitint=define use64bitall=undef uselongdouble=define
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='gcc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
    optimize='-O2',
    cppflags='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -fno-strict-aliasing -pipe -I/usr/local/include'
    ccversion='', gccversion='4.2.3 (Ubuntu 4.2.3-2ubuntu7)', gccosandvers=''
    intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
    ivtype='long long', ivsize=8, nvtype='long double', nvsize=12, Off_t='off_t', lseeksize=8
    alignbytes=4, prototype=define
  Linker and Libraries:
    ld='gcc', ldflags =' -L/usr/local/lib'
    libpth=/usr/local/lib /lib /usr/lib
    libs=-lnsl -ldb -ldl -lm -lcrypt -lutil -lpthread -lc
    perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
    libc=/lib/libc-2.7.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version='2.7'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
    cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib'

• PASS Bio-MAGE-20030502.3 i686-linux-thread-multi-64int-ld 2.6.24-16-generic by DAGOLDEN