PASS Bio-MAGE-20030502.3 i686-linux-64int-ld 2.6.24-16-generic

This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible.  See
http://testers.cpan.org/


--
Dear Jason E. Stewart,
    
This is a computer-generated report for Bio-MAGE-20030502.3
on perl 5.8.8, created by CPAN-Reporter-1.15. 

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester: 

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 /home/david/perl/5.8.8/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/Array............................ok
t/Array_package....................ok
t/ArrayDesign......................ok
t/ArrayDesign_package..............ok
t/ArrayGroup.......................ok
t/ArrayManufacture.................ok
t/ArrayManufactureDeviation........ok
t/Association......................ok
t/Audit............................ok
t/AuditAndSecurity_package.........ok
t/Base.............................Argument "val1" isn't numeric in numeric eq (==) at t/Base.t line 212.
Argument "val1" isn't numeric in numeric eq (==) at t/Base.t line 212.
Argument "val1" isn't numeric in numeric eq (==) at t/Base.t line 212.
Argument "val1" isn't numeric in numeric eq (==) at t/Base.t line 212.
ok
t/BibliographicReference...........ok
t/BioAssay.........................ok
t/BioAssay_package.................ok
t/BioAssayCreation.................ok
t/BioAssayData.....................ok
t/BioAssayData_package.............ok
t/BioAssayDataCluster..............ok
t/BioAssayDatum....................ok
t/BioAssayDimension................ok
t/BioAssayMap......................ok
t/BioAssayMapping..................ok
t/BioAssayTreatment................ok
t/BioDataCube......................ok
t/BioDataTuples....................ok
t/BioDataValues....................ok
t/BioEvent.........................ok
t/BioEvent_package.................ok
t/BioMaterial......................ok
t/BioMaterial_package..............ok
t/BioMaterialMeasurement...........ok
t/BioSample........................ok
t/BioSequence......................ok
t/BioSequence_package..............ok
t/BioSource........................ok
t/BQS_package......................ok
t/Channel..........................ok
t/CompositeCompositeMap............ok
t/CompositeGroup...................ok
t/CompositePosition................ok
t/CompositeSequence................ok
t/CompositeSequenceDimension.......ok
t/Compound.........................ok
t/CompoundMeasurement..............ok
t/ConcentrationUnit................ok
t/ConfidenceIndicator..............ok
t/Contact..........................ok
t/Database.........................ok
t/DatabaseEntry....................ok
t/DerivedBioAssay..................ok
t/DerivedBioAssayData..............ok
t/DerivedSignal....................ok
t/Describable......................ok
t/Description......................ok
t/Description_package..............ok
t/DesignElement....................ok
t/DesignElement_package............ok
t/DesignElementDimension...........ok
t/DesignElementGroup...............ok
t/DesignElementMap.................ok
t/DesignElementMapping.............ok
t/DistanceUnit.....................ok
t/Error............................ok
t/ExpectedValue....................ok
t/Experiment.......................ok
t/Experiment_package...............ok
t/ExperimentalFactor...............ok
t/ExperimentDesign.................ok
t/Extendable.......................ok
t/ExternalReference................ok
t/FactorValue......................ok
t/Failed...........................ok
t/Feature..........................ok
t/FeatureDefect....................ok
t/FeatureDimension.................ok
t/FeatureExtraction................ok
t/FeatureGroup.....................ok
t/FeatureInformation...............ok
t/FeatureLocation..................ok
t/FeatureReporterMap...............ok
t/Fiducial.........................ok
t/Hardware.........................ok
t/HardwareApplication..............ok
t/HigherLevelAnalysis_package......ok
t/Hybridization....................ok
t/Identifiable.....................ok
t/Image............................ok
t/ImageAcquisition.................ok
t/LabeledExtract...................ok
t/MAGE_package.....................ok
t/ManufactureLIMS..................ok
t/ManufactureLIMSBiomaterial.......ok
t/Map..............................ok
t/MassUnit.........................ok
t/MeasuredBioAssay.................ok
t/MeasuredBioAssayData.............ok
t/MeasuredSignal...................ok
t/Measurement......................ok
t/Measurement_package..............ok
t/MismatchInformation..............ok
t/NameValueType....................ok
t/Node.............................ok
t/NodeContents.....................ok
t/NodeValue........................ok
t/OntologyEntry....................ok
t/Organization.....................ok
t/Parameter........................ok
t/Parameterizable..................ok
t/ParameterizableApplication.......ok
t/ParameterValue...................ok
t/Person...........................ok
t/PhysicalArrayDesign..............ok
t/PhysicalBioAssay.................ok
t/Position.........................ok
t/PositionDelta....................ok
t/PresentAbsent....................ok
t/Protocol.........................ok
t/Protocol_package.................ok
t/ProtocolApplication..............ok
t/PValue...........................ok
t/QuantitationType.................ok
t/QuantitationType_package.........ok
t/QuantitationTypeDimension........ok
t/QuantitationTypeMap..............ok
t/QuantitationTypeMapping..........ok
t/QuantityUnit.....................ok
t/Ratio............................ok
t/Reporter.........................ok
t/ReporterCompositeMap.............ok
t/ReporterDimension................ok
t/ReporterGroup....................ok
t/ReporterPosition.................ok
t/Security.........................ok
t/SecurityGroup....................ok
t/SeqFeature.......................ok
t/SeqFeatureLocation...............ok
t/SequencePosition.................ok
t/Software.........................ok
t/SoftwareApplication..............ok
t/SpecializedQuantitationType......ok
t/StandardQuantitationType.........ok
t/TemperatureUnit..................ok
t/TimeUnit.........................ok
t/Transformation...................ok
t/Treatment........................ok
t/Unit.............................ok
t/VolumeUnit.......................ok
t/Zone.............................ok
t/ZoneDefect.......................ok
t/ZoneGroup........................ok
t/ZoneLayout.......................ok
All tests successful.
Files=151, Tests=16488, 23 wallclock secs ( 0.26 usr  1.62 sys +  7.53 cusr 13.15 csys = 22.56 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module      Need Have
    ----------- ---- ----
    Tie::IxHash 1.21 1.21

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    LANG = en_US.UTF-8
    LD_LIBRARY_PATH = /home/david/opt/subversion/lib
    PATH = .:/home/david/bin:/home/david/git/utility-scripts:/home/david/perl/current/bin:.:/home/david/bin:/home/david/git/utility-scripts:/home/david/perl/current/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
    PERL5LIB = /home/david/perl/5.8.8/lib/5.8.8
    PERL5OPT = -MCPAN::PERL5INC=yaml_module,YAML::Syck,tempfile,/tmp/cpan_perl5inc_Ut3X.txt
    PERL5_CPANPLUS_IS_RUNNING = 18463
    PERL5_CPAN_IS_RUNNING = 18463
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 11035,18463
    PERL_CR_SMOKER_CURRENT = Bio-MAGE-20030502.3
    PERL_MM_USE_DEFAULT = 1
    SHELL = /bin/bash
    TERM = screen

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /home/david/perl/5.8.8/bin/perl
    $UID/$EUID = 1000 / 1000
    $GID = 1000 1000 116 115 107 46 44 30 29 25 24 20 4
    $EGID = 1000 1000 116 115 107 46 44 30 29 25 24 20 4

Perl module toolchain versions installed:

    Module              Have   
    ------------------- -------
    CPAN                1.92_62
    Cwd                 3.2701 
    ExtUtils::CBuilder  0.23   
    ExtUtils::Command   1.13   
    ExtUtils::Install   1.45   
    ExtUtils::MakeMaker 6.44   
    ExtUtils::Manifest  1.51   
    ExtUtils::ParseXS   n/a    
    File::Spec          3.2701 
    Module::Build       0.2808 
    Module::Signature   n/a    
    Test::Harness       3.10   
    Test::More          0.80   
    YAML                0.66   
    YAML::Syck          1.04   
    version             n/a    


--

Summary of my perl5 (revision 5 version 8 subversion 8) configuration:
  Platform:
    osname=linux, osvers=2.6.24-16-generic, archname=i686-linux-64int-ld
    uname='linux griffon 2.6.24-16-generic #1 smp thu apr 10 13:23:42 utc 2008 i686 gnulinux '
    config_args='-de -Uversiononly -Dusedevel -Dusemorebits -Dprefix=/home/david/perl/5.8.8 -Dmydomain=.hyperbolic.net -Dcf_email=dagolden@cpan.org -Dperladmin=dagolden@cpan.org -Dcc=gcc'
    hint=recommended, useposix=true, d_sigaction=define
    usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef
    useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
    use64bitint=define use64bitall=undef uselongdouble=define
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='gcc', ccflags ='-fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
    optimize='-O2',
    cppflags='-fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include'
    ccversion='', gccversion='4.2.3 (Ubuntu 4.2.3-2ubuntu7)', gccosandvers=''
    intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
    ivtype='long long', ivsize=8, nvtype='long double', nvsize=12, Off_t='off_t', lseeksize=8
    alignbytes=4, prototype=define
  Linker and Libraries:
    ld='gcc', ldflags =' -L/usr/local/lib'
    libpth=/usr/local/lib /lib /usr/lib
    libs=-lnsl -ldl -lm -lcrypt -lutil -lc
    perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
    libc=/lib/libc-2.7.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version='2.7'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
    cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'

• PASS Bio-MAGE-20030502.3 i686-linux-64int-ld 2.6.24-16-generic by DAGOLDEN