FAIL Bio-NEXUS-0.69b sun4-solaris-thread-multi 2.9

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--
Dear Thomas Hladish,
    
This is a computer-generated report for Bio-NEXUS-0.69b
on perl 5.10.0, created by CPAN-Reporter-1.13. 

Thank you for uploading your work to CPAN.  However, there was a problem
testing your distribution.

If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:

http://cpantest.grango.org/wiki/CPANAuthorNotes

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester: 

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/local/bin/make test':

PERL_DL_NONLAZY=1 /usr/local/home/david/cpantesting/perl-5.10.0/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/_perl_module-loading..................ok
t/_perl_perlpod.........................ok
t/_perl_podcoverage.....................ok
t/assumptionsblock_options..............ok
t/assumptionsblock_wtset-scores.........ok
t/block_link-and-title..................ok
t/charactersblock_methods-01............ok
t/charactersblock_methods-02............ok
t/matrix_character-state-frequency......ok
t/matrix_charactersblock-interleave.....ok
t/matrix_historyblock-probab-distrib....ok
t/matrix_polymorphic-and-uncertain......ok
t/nexus_add-otu-clone...................WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 797] - not fully implemented!
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 797] - not fully implemented!
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 797] - not fully implemented!
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
-------------------------- EXCEPTION ----------------------------
Message: Can't clone, no Clone::PP Can't locate Clone/PP.pm in @INC (@INC contains: lib /disk2/david/perl-5.10.0/.cpan/build/Bio-NEXUS-0.69-bYFT0D/blib/lib /disk2/david/perl-5.10.0/.cpan/build/Bio-NEXUS-0.69-bYFT0D/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/.cpan/build/CGI-CMS-0.33-rYp0eJ/blib/arch /usr/local/home/david/cpantesting/perl-5.10.0/.cpan/build/CGI-CMS-0.33-rYp0eJ/blib/lib /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/5.10.0 /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0/sun4-solaris-thread-multi /usr/local/home/david/cpantesting/perl-5.10.0/lib/site_perl/5.10.0 .) at lib/Bio/NEXUS/TaxUnit.pm line 89.


An exception of type Bio::NEXUS::Util::Exceptions::ExtensionError
was thrown.

This kind of error happens when an extension module can not be
loaded.

Refer to the Bio::NEXUS::Util::Exceptions documentation for more
information.
------------------------- STACK TRACE ---------------------------
STACK: Bio::NEXUS::TaxUnit::clone('', 'Bio::NEXUS::TaxUnit=HASH(0x53bcf8)') called at lib/Bio/NEXUS/CharactersBlock.pm line 341
STACK: Bio::NEXUS::CharactersBlock::add_otu_clone('', 'Bio::NEXUS::CharactersBlock=HASH(0x53b368)', 'A', 'A_clone') called at lib/Bio/NEXUS.pm line 829
STACK: Bio::NEXUS::add_otu_clone('', 'Bio::NEXUS=HASH(0x518850)', 'A', 'A_clone') called at t/nexus_add-otu-clone.t line 55	
-----------------------------------------------------------------
# Looks like your test died just after 3.
dubious
	Test returned status 255 (wstat 65280, 0xff00)
	after all the subtests completed successfully
t/nexus_block-level-commands............ok
t/nexus_taxa-labels-quoted..............ok
t/nexus_taxa-labels-squarebrackets......ok
t/nexus_taxa-labels.....................ok
t/nexus_wrong_format....................Use of uninitialized value $_ in concatenation (.) or string at /disk2/david/perl-5.10.0/.cpan/build/Bio-NEXUS-0.69-bYFT0D/blib/lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at /disk2/david/perl-5.10.0/.cpan/build/Bio-NEXUS-0.69-bYFT0D/blib/lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at /disk2/david/perl-5.10.0/.cpan/build/Bio-NEXUS-0.69-bYFT0D/blib/lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at /disk2/david/perl-5.10.0/.cpan/build/Bio-NEXUS-0.69-bYFT0D/blib/lib/Bio/NEXUS/Util/Exceptions.pm line 64.
ok
        1/1 unexpectedly succeeded
TODO PASSED test 1

t/nhxcmd_parsing........................ok
t/notesblock_methods....................skipped
        all skipped: The notes block implementation is not complete
t/tree_equals...........................ok
t/tree_methods-01.......................ok
t/tree_methods-02.......................ok
t/tree_parsing..........................ok
t/tree_support-values...................ok
t/treesblock_methods....................Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
ok
        1/37 skipped: various reasons
t/uncat_clone_methods...................skipped
        all skipped: Clone::PP not installed
t/uncat_datablock_clustalw..............ok
t/uncat_equals_methods..................ok
        3/13 skipped: various reasons
t/uncat_excessive_whitespace............ok
t/uncat_ntax-nchar-dimensions...........Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
ok
        1/4 unexpectedly succeeded
TODO PASSED test 3

t/uncat_object-file-equality............ok
t/uncat_shared-commands.................ok
        3/5 skipped: various reasons
t/uncat_todo............................ok
t/uncat_write...........................ok
Failed Test             Stat Wstat Total Fail  List of Failed
-------------------------------------------------------------------------------
t/nexus_add-otu-clone.t  255 65280     3    0  ??
 (2 subtests UNEXPECTEDLY SUCCEEDED), 2 tests and 7 subtests skipped.
Failed 1/35 test scripts. 0/433 subtests failed.
Files=35, Tests=433, 33 wallclock secs (29.98 cusr +  2.61 csys = 32.59 CPU)
Failed 1/35 test programs. 0/433 subtests failed.
make: *** [test_dynamic] Error 255

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module     Need Have
    ---------- ---- ----
    Test::More 0    0.72

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    LD_LIBRARY_PATH = /usr/local/lib:/usr/lib:/usr/openwin/lib:/usr/ucblib:.
    PATH = /usr/local/bin:/usr/bin:/sbin:/usr/sbin:/usr/openwin/bin:/usr/ccs/bin:/usr/ucb:/etc:.
    PERL5LIB = /usr/local/home/david/cpantesting/perl-5.10.0/.cpan/build/CGI-CMS-0.33-rYp0eJ/blib/arch:/usr/local/home/david/cpantesting/perl-5.10.0/.cpan/build/CGI-CMS-0.33-rYp0eJ/blib/lib
    PERL5_CPANPLUS_IS_RUNNING = 156
    PERL5_CPAN_IS_RUNNING = 156
    SHELL = /bin/bash
    TERM = screen

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /usr/local/home/david/cpantesting/perl-5.10.0/bin/perl
    $UID/$EUID = 10217 / 10217
    $GID = 1 1
    $EGID = 1 1

Perl module toolchain versions installed:

    Module              Have     
    ------------------- ---------
    CPAN                1.9205   
    Cwd                 3.2701   
    ExtUtils::CBuilder  0.21     
    ExtUtils::Command   1.13     
    ExtUtils::Install   1.44     
    ExtUtils::MakeMaker 6.42     
    ExtUtils::Manifest  1.51_01  
    ExtUtils::ParseXS   2.18_02  
    File::Spec          3.2701   
    Module::Build       0.2808_01
    Module::Signature   n/a      
    Test::Harness       2.64     
    Test::More          0.72     
    YAML                0.66     
    YAML::Syck          1.04     
    version             0.74     


--

Summary of my perl5 (revision 5 version 10 subversion 0) configuration:
  Platform:
    osname=solaris, osvers=2.9, archname=sun4-solaris-thread-multi
    uname='sunos ohno.mrbill.net 5.9 generic_122300-03 sun4u sparc sunw,ultra-80 solaris '
    config_args='-de -Dprefix=/usr/local/home/david/cpantesting/perl-5.10.0 -Dusethreads'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=define, usemultiplicity=define
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=undef, use64bitall=undef, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-D_REENTRANT -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
    optimize='-O',
    cppflags='-D_REENTRANT -fno-strict-aliasing -pipe -I/usr/local/include'
    ccversion='', gccversion='4.2.1', gccosandvers=''
    intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=4321
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
    ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -L/usr/local/lib '
    libpth=/usr/local/lib /usr/lib /usr/ccs/lib
    libs=-lsocket -lnsl -lgdbm -ldb -ldl -lm -lpthread -lc
    perllibs=-lsocket -lnsl -ldl -lm -lpthread -lc
    libc=/lib/libc.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
    cccdlflags='-fPIC', lddlflags='-G -L/usr/local/lib'

• FAIL Bio-NEXUS-0.69b sun4-solaris-thread-multi 2.9 by david