PASS Bio-NEXUS-0.69b i686-linux 2.4.27-3-686

This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible.  See
http://testers.cpan.org/

Please cc any replies to cpan-testers@perl.org to keep other
test volunteers informed and to prevent any duplicate effort.

--
Dear Thomas Hladish,
    
This is a computer-generated report for Bio-NEXUS-0.69b
on perl 5.6.2, created by CPAN-Reporter-1.13. 

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester: 

none provided

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 /home/david/cpantesting/perl-5.6.2/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/_perl_module-loading..................ok
t/_perl_perlpod.........................ok
t/_perl_podcoverage.....................ok
t/assumptionsblock_options..............ok
t/assumptionsblock_wtset-scores.........ok
t/block_link-and-title..................ok
t/charactersblock_methods-01............ok
t/charactersblock_methods-02............ok
t/matrix_character-state-frequency......ok
t/matrix_charactersblock-interleave.....ok
t/matrix_historyblock-probab-distrib....ok
t/matrix_polymorphic-and-uncertain......ok
t/nexus_add-otu-clone...................skipped
        all skipped: Test::Deep not found
t/nexus_block-level-commands............ok
t/nexus_taxa-labels-quoted..............ok
t/nexus_taxa-labels-squarebrackets......ok
t/nexus_taxa-labels.....................ok
t/nexus_wrong_format....................ok
        1/1 unexpectedly succeeded
TODO PASSED test 1

t/nhxcmd_parsing........................ok
t/notesblock_methods....................skipped
        all skipped: The notes block implementation is not complete
t/tree_equals...........................ok
t/tree_methods-01.......................ok
t/tree_methods-02.......................ok
t/tree_parsing..........................ok
t/tree_support-values...................ok
t/treesblock_methods....................ok
        1/37 skipped: various reasons
t/uncat_clone_methods...................skipped
        all skipped: Clone::PP not installed
t/uncat_datablock_clustalw..............ok
t/uncat_equals_methods..................ok
        3/13 skipped: various reasons
t/uncat_excessive_whitespace............ok
t/uncat_ntax-nchar-dimensions...........ok
        1/4 unexpectedly succeeded
TODO PASSED test 3

t/uncat_object-file-equality............ok
t/uncat_shared-commands.................ok
        3/5 skipped: various reasons
t/uncat_todo............................Use of uninitialized value in eval "string" at t/uncat_todo.t line 18.
ok
t/uncat_write...........................ok
All tests successful (2 subtests UNEXPECTEDLY SUCCEEDED), 3 tests and 7 subtests skipped.
Passed TODO                     Stat Wstat TODOs Pass  List of Passed
-------------------------------------------------------------------------------
t/nexus_wrong_format.t                         1    1  1
t/uncat_ntax-nchar-dimensions.t                2    1  3
Files=35, Tests=430, 38 wallclock secs ( 3.35 cusr +  1.14 csys =  4.49 CPU)

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module     Need Have
    ---------- ---- ----
    Test::More 0    0.70

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    LANG = en_GB
    LANGUAGE = en_GB:en_US:en_GB:en
    PATH = /usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games
    PERL5LIB = 
    PERL5_CPANPLUS_IS_RUNNING = 22167
    PERL5_CPAN_IS_RUNNING = 22167
    SHELL = /bin/bash
    TERM = screen

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /home/david/cpantesting/perl-5.6.2/bin/perl
    $UID/$EUID = 1000 / 1000
    $GID = 1000 46 44 29 25 24 20 1000
    $EGID = 1000 46 44 29 25 24 20 1000

Perl module toolchain versions installed:

    Module              Have  
    ------------------- ------
    CPAN                1.9205
    Cwd                 3.24  
    ExtUtils::CBuilder  n/a   
    ExtUtils::Command   1.13  
    ExtUtils::Install   1.41  
    ExtUtils::MakeMaker 6.36  
    ExtUtils::Manifest  1.51  
    ExtUtils::ParseXS   n/a   
    File::Spec          3.24  
    Module::Build       0.2808
    Module::Signature   n/a   
    Test::Harness       2.64  
    Test::More          0.70  
    YAML                n/a   
    YAML::Syck          n/a   
    version             0.7203


--

Summary of my perl5 (revision 5.0 version 6 subversion 2) configuration:
  Platform:
    osname=linux, osvers=2.4.27-3-686, archname=i686-linux
    uname='linux pigsty 2.4.27-3-686 #1 tue dec 5 21:03:54 utc 2006 i686 gnulinux '
    config_args='-Dprefix=/home/david/cpantesting/perl-5.6.2 -de'
    hint=recommended, useposix=true, d_sigaction=define
    usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef
    useperlio=undef d_sfio=undef uselargefiles=define usesocks=undef
    use64bitint=undef use64bitall=undef uselongdouble=undef
  Compiler:
    cc='cc', ccflags ='-fno-strict-aliasing -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
    optimize='-O3',
    cppflags='-fno-strict-aliasing'
    ccversion='', gccversion='3.3.5 (Debian 1:3.3.5-13)', gccosandvers=''
    intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
    ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=4, usemymalloc=n, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -L/usr/local/lib'
    libpth=/usr/local/lib /lib /usr/lib
    libs=-lnsl -lgdbm -ldl -lm -lc -lcrypt -lutil
    perllibs=-lnsl -ldl -lm -lc -lcrypt -lutil
    libc=/lib/libc-2.3.2.so, so=so, useshrplib=false, libperl=libperl.a
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-rdynamic'
    cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'

• PASS Bio-NEXUS-0.69b i686-linux 2.4.27-3-686 by david