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Postings from April 2008
FAIL Bio-NEXUS-0.69b i386-freebsd-64int 7.0-release
From:
chris
Date:
April 26, 2008 02:07
Subject:
FAIL Bio-NEXUS-0.69b i386-freebsd-64int 7.0-release
This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible. See
http://testers.cpan.org/
Please cc any replies to cpan-testers@perl.org to keep other
test volunteers informed and to prevent any duplicate effort.
--
Dear TJHLADISH,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.84. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'make test':
[MSG] [Sat Apr 26 08:26:18 2008] Trying to get 'http://www.cpan.org/authors/id/T/TJ/TJHLADISH/CHECKSUMS'
[MSG] [Sat Apr 26 08:26:20 2008] Checksum matches for 'Bio-NEXUS-0.69b.tar.gz'
[MSG] [Sat Apr 26 08:26:30 2008] Extracted 'Bio-NEXUS-0.69/'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Omland-Ravens.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_assumptions-block_options_02.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-bush-dos.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-inode-labels-quoted2.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-bush.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/really-long-names.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_02.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/char-matrix-spaces.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/characters-block-interleave.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-branchlength-scientific.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/KOG0003.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family4nl.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/FaresWolfeCCT.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/UnaSmithHIV-both.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_01.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_characters-block_format_01.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-ladder-uneven.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_assumptions-block_options_01.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/quoted-strings1.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family9iw.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_notes-text.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Bird_Ovomucoids.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-cladogram.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Human_mt_DNA.nex'
[MSG] [Sat Apr 26 08:26:31 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_private-commands.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/temp.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_upper_nodiag.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Treebase-liverwort-rbcl.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/01_taxa-labels-squarebrackets.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-state-frequency.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/history-block_probab-distrib.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-polymorphic-uncertain.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-ladder.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-uncertain.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-polymorphic.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-inode-labels-partial.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-extended-root-branch.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-ladder.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_equals_methods.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_01.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family6iw.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees_branch-support-values.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-trees.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-bush-unix.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Primate_mtDNA.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/data-block_clustalw.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-rake-cladogram.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/01_basic.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_lower_nodiag.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family1nlw.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/long-names.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_03.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-polymorphic-doublequotes.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/quoted-strings2.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_02.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/barns-combined.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_rect.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-rake.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_04.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-inode-labels-quoted1.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-multiple.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_upper.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_characters-block_format_02.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family7n.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_block_level_methods.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/intrablock-comment.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Kingdoms_DNA.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-rake.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_upper_no-diag.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_03.nex'
[MSG] [Sat Apr 26 08:26:32 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-bush-mac.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/tree-nhx.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/simple_taxa_and_chars.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_upper.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-ladder-cladogram.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-uneven.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family2alw.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/unaligned_simple_01.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family5alw.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/char-interleave.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_lower.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/radical-whitespace.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-quoted-string-name2.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_05.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_object-file-equality_01.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-translate.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family10i.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_wtset-scores.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_lower.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Omland-Orioles.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family3il.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-branchlength-zero.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/multiline-intrablock-comment.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_object-file-equality_02.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-basal-trifurcation.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_rect_nodiag.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_characters-block_initial.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_04.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Treebase-horsetails-dna.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Treebase-chlamy-dna.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family8a.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/top-level-comment.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-multiple-challenges.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-branchlength-negative.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_05.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-quoted-string-name1.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Treebase-horsetails-classic.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-inode-labels.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Marsupial_Wolf.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_lower_no-diag.nex'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_todo.t'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_taxa-labels-squarebrackets.t'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_wrong_format.t'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_datablock_clustalw.t'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/block_link-and-title.t'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/assumptionsblock_options.t'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_shared-commands.t'
[MSG] [Sat Apr 26 08:26:33 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_ntax-nchar-dimensions.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_excessive_whitespace.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/tree_methods-02.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/notesblock_methods.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/treesblock_methods.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/matrix_charactersblock-interleave.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/_perl_podcoverage.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/tree_parsing.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_taxa-labels.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_object-file-equality.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/tree_methods-01.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/_perl_module-loading.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/matrix_polymorphic-and-uncertain.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/tree_support-values.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/charactersblock_methods-02.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/assumptionsblock_wtset-scores.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_equals_methods.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_clone_methods.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/nhxcmd_parsing.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_block-level-commands.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_add-otu-clone.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/matrix_character-state-frequency.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/charactersblock_methods-01.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_taxa-labels-quoted.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_write.t'
[MSG] [Sat Apr 26 08:26:34 2008] Extracted 'Bio-NEXUS-0.69/t/tree_equals.t'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/t/_perl_perlpod.t'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/t/matrix_historyblock-probab-distrib.t'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/doc/'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/doc/UserManual.pod'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/doc/changes.txt'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/doc/buglist.txt'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/doc/ToDo.txt'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/doc/NEXUS_coverage.html'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/doc/example1.nex'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/doc/Installation.pod'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/doc/Tutorial.pod'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/exec/'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/exec/nexplot.pl'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/exec/history.pl'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/exec/nexfix.pl'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/exec/readin_tcoffee.pl'
[MSG] [Sat Apr 26 08:26:35 2008] Extracted 'Bio-NEXUS-0.69/exec/nexus-convert.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/.perltidyrc'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/bugs.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/newtonex.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/nex2text_tree.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/bugs.cmd.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/p3treeplot.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/nexdump.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/setmaker.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/tree2nex.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/align2nex.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/nexdiff.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/jags.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/roundtrip.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/pppplot.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/tree_equality.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/exec/nextool.pl'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/SpanBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/.perltidyrc'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/NotesBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Tree.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/HistoryBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/UnknownBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/DataBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/CharactersBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/TaxUnitSet.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Node.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Util/'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Util/Logger.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Util/Exceptions.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/NHXCmd.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/DistancesBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/TaxaBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/CodonsBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Matrix.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/SetsBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Functions.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/TreesBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/AssumptionsBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Block.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/TaxUnit.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/UnalignedBlock.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/WeightSet.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/.perltidyrc'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS.pm'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/data/'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/data/color-my-taxsets.nex'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/data/SPAN_Family3il.ps'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/data/SPAN_Family3il.pdf'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/data/Liang_et_al_Figure.nex'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/data/SPAN_Family3il.nex'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/data/basic.nex'
[MSG] [Sat Apr 26 08:26:36 2008] Extracted 'Bio-NEXUS-0.69/README'
[MSG] [Sat Apr 26 08:26:37 2008] Extracted 'Bio-NEXUS-0.69/META.yml'
[MSG] [Sat Apr 26 08:26:37 2008] Extracted 'Bio-NEXUS-0.69/Makefile.PL'
[MSG] [Sat Apr 26 08:26:37 2008] Extracted 'Bio-NEXUS-0.69/MANIFEST'
[MSG] [Sat Apr 26 08:26:37 2008] Extracted 'Bio-NEXUS-0.69/Build.PL'
[MSG] [Sat Apr 26 08:26:37 2008] Extracted 'Bio-NEXUS-0.69/LICENSE'
[MSG] [Sat Apr 26 08:26:37 2008] Extracted 'Bio-NEXUS-0.69/README_admin'
[MSG] [Sat Apr 26 08:26:37 2008] Extracted 'Bio::NEXUS' to '/usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69'
[MSG] [Sat Apr 26 08:26:42 2008] Writing Makefile for Bio::NEXUS
*** You don't seem to have Clone::PP installed.
This means some functionality won't be
available (though core functionality will be).
*** You don't seem to have Test::Deep installed.
This means some functionality won't be
available (though core functionality will be).
[MSG] [Sat Apr 26 08:26:42 2008] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value'
[MSG] [Sat Apr 26 08:26:46 2008] cp exec/nextool.pl blib/script/nextool.pl
/usr/home/cpan/blead/bin/perl5.11.0 "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/nextool.pl
cp exec/nex2text_tree.pl blib/script/nex2text_tree.pl
/usr/home/cpan/blead/bin/perl5.11.0 "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/nex2text_tree.pl
cp exec/nexplot.pl blib/script/nexplot.pl
/usr/home/cpan/blead/bin/perl5.11.0 "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/nexplot.pl
Manifying blib/man1/nextool.pl.1
Manifying blib/man1/nex2text_tree.pl.1
Manifying blib/man1/nexplot.pl.1
Manifying blib/man3/Bio::NEXUS::DataBlock.3
Manifying blib/man3/Bio::NEXUS::CodonsBlock.3
Manifying blib/man3/Bio::NEXUS::HistoryBlock.3
Manifying blib/man3/Bio::NEXUS::NHXCmd.3
Manifying blib/man3/Bio::NEXUS::NotesBlock.3
Manifying blib/man3/Bio::NEXUS::TaxUnit.3
Manifying blib/man3/Bio::NEXUS::CharactersBlock.3
Manifying blib/man3/Bio::NEXUS::SpanBlock.3
Manifying blib/man3/Bio::NEXUS::TaxUnitSet.3
Manifying blib/man3/Bio::NEXUS::UnalignedBlock.3
Manifying blib/man3/Bio::NEXUS::DistancesBlock.3
Manifying blib/man3/Bio::NEXUS::Node.3
Manifying blib/man3/Bio::NEXUS::UnknownBlock.3
Manifying blib/man3/Bio::NEXUS::Matrix.3
Manifying blib/man3/Bio::NEXUS::Tree.3
Manifying blib/man3/Bio::NEXUS::WeightSet.3
Manifying blib/man3/Bio::NEXUS::SetsBlock.3
Manifying blib/man3/Bio::NEXUS::Util::Exceptions.3
Manifying blib/man3/Bio::NEXUS::TaxaBlock.3
Manifying blib/man3/Bio::NEXUS::TreesBlock.3
Manifying blib/man3/Bio::NEXUS::Util::Logger.3
Manifying blib/man3/Bio::NEXUS::AssumptionsBlock.3
Manifying blib/man3/Bio::NEXUS::Block.3
Manifying blib/man3/Bio::NEXUS.3
Manifying blib/man3/Bio::NEXUS::Functions.3
[ERROR] [Sat Apr 26 08:27:53 2008] MAKE TEST failed: Illegal seek PERL_DL_NONLAZY=1 /usr/home/cpan/blead/bin/perl5.11.0 "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/_perl_module-loading.................... Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/_perl_perlpod...........................skipped: Test::Pod required for testing POD
t/_perl_podcoverage.......................skipped: Test::Pod::Coverage required for testing POD coverage
t/assumptionsblock_options................ok
t/assumptionsblock_wtset-scores...........ok
t/block_link-and-title....................ok
t/charactersblock_methods-01..............ok
t/charactersblock_methods-02..............Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/arch /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib /usr/home/cpan/blead/lib/perl5/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/5.11.0 /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0 .) at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/_perl_module-loading.t line 18.
BEGIN failed--compilation aborted at t/_perl_module-loading.t line 18.
# Looks like your test died before it could output anything.
ok
t/matrix_character-state-frequency........ok
t/matrix_charactersblock-interleave.......ok
t/matrix_historyblock-probab-distrib......ok
t/matrix_polymorphic-and-uncertain........ok
t/nexus_add-otu-clone.....................skipped: Test::Deep not found
t/nexus_block-level-commands..............ok
t/nexus_taxa-labels-quoted................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/arch /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib /usr/home/cpan/blead/lib/perl5/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/5.11.0 /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0 .) at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/nexus_taxa-labels-quoted.t line 18.
BEGIN failed--compilation aborted at t/nexus_taxa-labels-quoted.t line 18.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/nexus_taxa-labels-squarebrackets........Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/arch /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib /usr/home/cpan/blead/lib/perl5/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/5.11.0 /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0 .) at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/nexus_taxa-labels-squarebrackets.t line 21.
BEGIN failed--compilation aborted at t/nexus_taxa-labels-squarebrackets.t line 21.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/nexus_taxa-labels.......................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/arch /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib /usr/home/cpan/blead/lib/perl5/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/5.11.0 /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0 .) at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/nexus_taxa-labels.t line 21.
BEGIN failed--compilation aborted at t/nexus_taxa-labels.t line 21.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/nexus_wrong_format......................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/arch /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib /usr/home/cpan/blead/lib/perl5/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/5.11.0 /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0 .) at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/nexus_wrong_format.t line 20.
BEGIN failed--compilation aborted at t/nexus_wrong_format.t line 20.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/nhxcmd_parsing..........................ok
t/notesblock_methods......................skipped: The notes block implementation is not complete
t/tree_equals.............................ok
t/tree_methods-01.........................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/arch /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib /usr/home/cpan/blead/lib/perl5/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/5.11.0 /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0 .) at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/tree_methods-01.t line 18.
BEGIN failed--compilation aborted at t/tree_methods-01.t line 18.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/tree_methods-02.........................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/arch /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib /usr/home/cpan/blead/lib/perl5/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/5.11.0 /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0 .) at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/tree_methods-02.t line 18.
BEGIN failed--compilation aborted at t/tree_methods-02.t line 18.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/tree_parsing............................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/arch /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib /usr/home/cpan/blead/lib/perl5/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/5.11.0 /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0 .) at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/tree_parsing.t line 19.
BEGIN failed--compilation aborted at t/tree_parsing.t line 19.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/tree_support-values.....................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/arch /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib /usr/home/cpan/blead/lib/perl5/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/5.11.0 /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0 .) at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/tree_support-values.t line 18.
BEGIN failed--compilation aborted at t/tree_support-values.t line 18.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/treesblock_methods......................Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
ok
t/uncat_clone_methods.....................skipped: Clone::PP not installed
t/uncat_datablock_clustalw................ok
t/uncat_equals_methods....................ok
t/uncat_excessive_whitespace..............ok
t/uncat_ntax-nchar-dimensions.............Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
ok
t/uncat_object-file-equality..............ok
t/uncat_shared-commands...................ok
t/uncat_todo..............................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/arch /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib /usr/home/cpan/blead/lib/perl5/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/5.11.0 /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0/i386-freebsd-64int /usr/home/cpan/blead/lib/perl5/site_perl/5.11.0 .) at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/uncat_todo.t line 19.
BEGIN failed--compilation aborted at t/uncat_todo.t line 19.
# Looks like your test died before it could output anything.
Dubious, test returned 255 (wstat 65280, 0xff00)
No subtests run
t/uncat_write.............................ok
Test Summary Report
-------------------
t/_perl_module-loading.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/nexus_taxa-labels-quoted.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/nexus_taxa-labels-squarebrackets.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/nexus_taxa-labels.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/nexus_wrong_format.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/tree_methods-01.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/tree_methods-02.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/tree_parsing.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/tree_support-values.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
t/uncat_ntax-nchar-dimensions.t (Wstat: 0 Tests: 4 Failed: 0)
TODO passed: 3
t/uncat_todo.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: No plan found in TAP output
Files=35, Tests=228, 65 wallclock secs ( 0.14 usr 0.73 sys + 2.45 cusr 4.72 csys = 8.04 CPU)
Result: FAIL
Failed 10/35 test programs. 0/228 subtests failed.
*** Error code 255
Stop in /usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69.
[MSG] [Sat Apr 26 08:27:53 2008] DEFAULT 'proceed_on_test_failure' HANDLER RETURNING 'sub return value'
MISSING PREREQUISITES:
It was observed that the test suite seem to fail without these modules:
Bio::NEXUS::Util::Exceptions
As such, adding the prerequisite module(s) to 'PREREQ_PM' in your
Makefile.PL should solve this problem. For example:
WriteMakefile(
AUTHOR => 'TJHLADISH (cpanplus-info@lists.sf.net)',
... # other information
PREREQ_PM => {
'Bio::NEXUS::Util::Exceptions' => '0', # or a minimum working version
}
);
If you are interested in making a more flexible Makefile.PL that can
probe for missing dependencies and install them, ExtUtils::AutoInstall
at <http://search.cpan.org/dist/ExtUtils-AutoInstall/> may be
worth a look.
Thanks! :-)
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
Test::More 0.80 0
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPAN::YACSmoke 0.0307. Powered by POE::Component::CPAN::YACSmoke.
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
PATH = /sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/home/cpan/bin
PERL5LIB = :/usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/lib:/usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib/arch:/usr/home/cpan/blead/.cpanplus/5.11.0/build/Bio-NEXUS-0.69/blib
PERL5_CPANPLUS_IS_RUNNING = 60465
PERL5_CPANPLUS_IS_VERSION = 0.84
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/local/bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /usr/home/cpan/blead/bin/perl5.11.0
UID: $< = 1002
EUID: $> = 1002
GID: $( = 1001 1001 1001
EGID: $) = 1001 1001 1001
-------------------------------
--
Summary of my perl5 (revision 5 version 11 subversion 0 patch 33741) configuration:
Platform:
osname=freebsd, osvers=7.0-release, archname=i386-freebsd-64int
uname='freebsd waterloo.bingosnet.co.uk 7.0-release freebsd 7.0-release #0: sun feb 24 19:59:52 utc 2008 root@logan.cse.buffalo.edu:usrobjusrsrcsysgeneric i386 '
config_args='-e -Dprefix=/usr/home/cpan/blead -Duse64bitint -Dusedevel -d'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include',
optimize='-O',
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.2.1 20070719 [FreeBSD]', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='cc', ldflags ='-Wl,-E -fstack-protector -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib
libs=-lm -lcrypt -lutil -lc
perllibs=-lm -lcrypt -lutil -lc
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
cccdlflags='-DPIC -fPIC', lddlflags='-shared -L/usr/local/lib'
-
FAIL Bio-NEXUS-0.69b i386-freebsd-64int 7.0-release
by chris