Front page | perl.cpan.testers |
Postings from April 2008
FAIL Bio-NEXUS-0.69b i386-netbsd-thread-multi-64int 3.1
Thread Previous
|
Thread Next
From:
chris
Date:
April 23, 2008 22:34
Subject:
FAIL Bio-NEXUS-0.69b i386-netbsd-thread-multi-64int 3.1
This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible. See
http://testers.cpan.org/
Please cc any replies to cpan-testers@perl.org to keep other
test volunteers informed and to prevent any duplicate effort.
--
Dear TJHLADISH,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.80. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'make test':
[MSG] [Thu Apr 24 06:33:36 2008] Trying to get 'http://www.cpan.org/authors/id/T/TJ/TJHLADISH/CHECKSUMS'
[MSG] [Thu Apr 24 06:33:37 2008] Checksum matches for 'Bio-NEXUS-0.69b.tar.gz'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Omland-Ravens.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_assumptions-block_options_02.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-bush-dos.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-inode-labels-quoted2.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-bush.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/really-long-names.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_02.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/char-matrix-spaces.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/characters-block-interleave.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-branchlength-scientific.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/KOG0003.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family4nl.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/FaresWolfeCCT.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/UnaSmithHIV-both.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_01.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_characters-block_format_01.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-ladder-uneven.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_assumptions-block_options_01.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/quoted-strings1.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family9iw.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_notes-text.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Bird_Ovomucoids.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-cladogram.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Human_mt_DNA.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_private-commands.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/temp.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_upper_nodiag.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Treebase-liverwort-rbcl.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/01_taxa-labels-squarebrackets.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-state-frequency.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/history-block_probab-distrib.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-polymorphic-uncertain.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-ladder.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-uncertain.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-polymorphic.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-inode-labels-partial.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-extended-root-branch.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-ladder.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_equals_methods.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_01.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family6iw.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees_branch-support-values.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-trees.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-bush-unix.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Primate_mtDNA.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/data-block_clustalw.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-rake-cladogram.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/01_basic.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_lower_nodiag.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family1nlw.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/long-names.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_03.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_character-polymorphic-doublequotes.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/quoted-strings2.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_02.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/barns-combined.nex'
[MSG] [Thu Apr 24 06:33:40 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_rect.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-rake.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_04.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-inode-labels-quoted1.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-multiple.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_upper.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_characters-block_format_02.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family7n.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_block_level_methods.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/intrablock-comment.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Kingdoms_DNA.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-rake.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_upper_no-diag.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_03.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/basic-bush-mac.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/tree-nhx.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/simple_taxa_and_chars.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_upper.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-ladder-cladogram.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-uneven.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family2alw.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/unaligned_simple_01.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family5alw.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/char-interleave.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_lower.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/radical-whitespace.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-quoted-string-name2.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_shared_commands_05.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_object-file-equality_01.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-translate.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family10i.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_wtset-scores.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_lower.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Omland-Orioles.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family3il.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-branchlength-zero.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/multiline-intrablock-comment.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_object-file-equality_02.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-basal-trifurcation.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_interleave_rect_nodiag.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/02_characters-block_initial.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_04.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Treebase-horsetails-dna.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Treebase-chlamy-dna.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/SPAN_Family8a.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/top-level-comment.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-multiple-challenges.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-branchlength-negative.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/04_charactersblock_methods_05.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-quoted-string-name1.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Treebase-horsetails-classic.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/trees-tree-bush-inode-labels.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/Marsupial_Wolf.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/data/compliant/dist_lower_no-diag.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_todo.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_taxa-labels-squarebrackets.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_wrong_format.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_datablock_clustalw.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/block_link-and-title.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/assumptionsblock_options.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_shared-commands.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_ntax-nchar-dimensions.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_excessive_whitespace.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/tree_methods-02.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/notesblock_methods.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/treesblock_methods.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/matrix_charactersblock-interleave.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/_perl_podcoverage.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/tree_parsing.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_taxa-labels.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_object-file-equality.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/tree_methods-01.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/_perl_module-loading.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/matrix_polymorphic-and-uncertain.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/tree_support-values.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/charactersblock_methods-02.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/assumptionsblock_wtset-scores.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_equals_methods.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_clone_methods.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/nhxcmd_parsing.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_block-level-commands.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_add-otu-clone.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/matrix_character-state-frequency.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/charactersblock_methods-01.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/nexus_taxa-labels-quoted.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/uncat_write.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/tree_equals.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/_perl_perlpod.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/t/matrix_historyblock-probab-distrib.t'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/doc/'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/doc/UserManual.pod'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/doc/changes.txt'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/doc/buglist.txt'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/doc/ToDo.txt'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/doc/NEXUS_coverage.html'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/doc/example1.nex'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/doc/Installation.pod'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/doc/Tutorial.pod'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/nexplot.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/history.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/nexfix.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/readin_tcoffee.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/nexus-convert.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/.perltidyrc'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/bugs.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/newtonex.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/nex2text_tree.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/bugs.cmd.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/p3treeplot.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/nexdump.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/setmaker.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/tree2nex.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/align2nex.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/nexdiff.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/jags.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/roundtrip.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/pppplot.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/tree_equality.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/exec/nextool.pl'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/SpanBlock.pm'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/.perltidyrc'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/NotesBlock.pm'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Tree.pm'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/HistoryBlock.pm'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/UnknownBlock.pm'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/DataBlock.pm'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/CharactersBlock.pm'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/TaxUnitSet.pm'
[MSG] [Thu Apr 24 06:33:41 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Node.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Util/'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Util/Logger.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Util/Exceptions.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/NHXCmd.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/DistancesBlock.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/TaxaBlock.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/CodonsBlock.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Matrix.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/SetsBlock.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Functions.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/TreesBlock.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/AssumptionsBlock.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/Block.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/TaxUnit.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/UnalignedBlock.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS/WeightSet.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/.perltidyrc'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/lib/Bio/NEXUS.pm'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/data/'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/data/color-my-taxsets.nex'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/data/SPAN_Family3il.ps'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/data/SPAN_Family3il.pdf'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/data/Liang_et_al_Figure.nex'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/data/SPAN_Family3il.nex'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/data/basic.nex'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/README'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/META.yml'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/Makefile.PL'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/MANIFEST'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/Build.PL'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/LICENSE'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio-NEXUS-0.69/README_admin'
[MSG] [Thu Apr 24 06:33:42 2008] Extracted 'Bio::NEXUS' to '/home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69'
[MSG] [Thu Apr 24 06:33:43 2008] *** You don't seem to have Clone::PP installed.
This means some functionality won't be
available (though core functionality will be).
Writing Makefile for Bio::NEXUS
[MSG] [Thu Apr 24 06:33:43 2008] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value'
[MSG] [Thu Apr 24 06:33:47 2008] cp exec/nextool.pl blib/script/nextool.pl
/home/cpan/perl583/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/nextool.pl
cp exec/nex2text_tree.pl blib/script/nex2text_tree.pl
/home/cpan/perl583/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/nex2text_tree.pl
cp exec/nexplot.pl blib/script/nexplot.pl
/home/cpan/perl583/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/nexplot.pl
Manifying blib/man1/nextool.pl.1
Manifying blib/man1/nex2text_tree.pl.1
Manifying blib/man1/nexplot.pl.1
Manifying blib/man3/Bio::NEXUS::DataBlock.3
Manifying blib/man3/Bio::NEXUS::CodonsBlock.3
Manifying blib/man3/Bio::NEXUS::HistoryBlock.3
Manifying blib/man3/Bio::NEXUS::NHXCmd.3
Manifying blib/man3/Bio::NEXUS::NotesBlock.3
Manifying blib/man3/Bio::NEXUS::TaxUnit.3
Manifying blib/man3/Bio::NEXUS::CharactersBlock.3
Manifying blib/man3/Bio::NEXUS::SpanBlock.3
Manifying blib/man3/Bio::NEXUS::TaxUnitSet.3
Manifying blib/man3/Bio::NEXUS::UnalignedBlock.3
Manifying blib/man3/Bio::NEXUS::DistancesBlock.3
Manifying blib/man3/Bio::NEXUS::Node.3
Manifying blib/man3/Bio::NEXUS::UnknownBlock.3
Manifying blib/man3/Bio::NEXUS::Matrix.3
Manifying blib/man3/Bio::NEXUS::Tree.3
Manifying blib/man3/Bio::NEXUS::WeightSet.3
Manifying blib/man3/Bio::NEXUS::SetsBlock.3
Manifying blib/man3/Bio::NEXUS::Util::Exceptions.3
Manifying blib/man3/Bio::NEXUS::TaxaBlock.3
Manifying blib/man3/Bio::NEXUS::TreesBlock.3
Manifying blib/man3/Bio::NEXUS::Util::Logger.3
Manifying blib/man3/Bio::NEXUS::AssumptionsBlock.3
Manifying blib/man3/Bio::NEXUS::Block.3
Manifying blib/man3/Bio::NEXUS.3
Manifying blib/man3/Bio::NEXUS::Functions.3
[ERROR] [Thu Apr 24 06:34:00 2008] MAKE TEST failed: PERL_DL_NONLAZY=1 /home/cpan/perl583/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/_perl_module-loading..................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/arch /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl . /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl .) at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/bdubious
Test returned status 255 (wstat 65280, 0xff00)
t/_perl_perlpod.........................lib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/_perl_module-loading.t line 18.
BEGIN failed--compilation aborted at t/_perl_module-loading.t line 18.
# Looks like your test died before it could output anything.
skipped
all skipped: Test::Pod required for testing POD
t/_perl_podcoverage.....................skipped
all skipped: Test::Pod::Coverage required for testing POD coverage
t/assumptionsblock_options..............ok
t/assumptionsblock_wtset-scores.........ok
t/block_link-and-title..................ok
t/charactersblock_methods-01............ok
t/charactersblock_methods-02............ok
t/matrix_character-state-frequency......ok
t/matrix_charactersblock-interleave.....ok
t/matrix_historyblock-probab-distrib....ok
t/matrix_polymorphic-and-uncertain......ok
t/nexus_add-otu-clone...................WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 797] - not fully implemented!
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 797] - not fully implemented!
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 797] - not fully implemented!
-------------------------- EXCEPTION ----------------------------
Message: Can't clone, no Clone::PP Can't locate Clone/PP.pm in @INC (@INC contains: lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/arch /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl .) at lib/Bio/NEXUS/TaxUnit.pm line 89.
An exception of type Bio::NEXUS::Util::Exceptions::ExtensionError
was thrown.
This kind of error happens when an extension module can not be
loaded.
Refer to the Bio::NEXUS::Util::Exceptions documentation for more
information.
------------------------- STACK TRACE ---------------------------
STACK: Bio::NEXUS::TaxUnit::clone('Bio::NEXUS::TaxUnit=HASH(0x85541c8)') called at lib/Bio/NEXUS/CharactersBlock.pm line 341
STACK: Bio::NEXUS::CharactersBlock::add_otu_clone('Bio::NEXUS::CharactersBlock=HASH(0x854f1bc)', 'A', 'A_clone') called at lib/Bio/NEXUS.pm line 829
STACK: Bio::NEXUS::add_otu_clone('Bio::NEXUS=HASH(0x854aad0)', 'A', 'A_clone') called at t/nexus_add-otu-clone.t line 55
-----------------------------------------------------------------
# Looks like your test died just after 3.
dubious
Test returned status 255 (wstat 65280, 0xff00)
after all the subtests completed successfully
t/nexus_block-level-commands............ok
t/nexus_taxa-labels-quoted..............Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/arch /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl . /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl .) at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/nexus_taxa-labels-quoted.t line 18.
BEGIN failed--compilation aborted at t/nexus_taxa-labels-quoted.t line 18.
# Looks like your test died before it could output anything.
dubious
Test returned status 255 (wstat 65280, 0xff00)
t/nexus_taxa-labels-squarebrackets......Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/arch /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl . /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl .) at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/nexus_taxa-labels-squarebrackets.t line 21.
BEGIN failed--compilation aborted at t/nexus_taxa-labels-squarebrackets.t line 21.
# Looks like your test died before it could output anything.
dubious
Test returned status 255 (wstat 65280, 0xff00)
t/nexus_taxa-labels.....................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/arch /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl . /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl .) at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/nexus_taxa-labels.t line 21.
BEGIN failed--compilation aborted at t/nexus_taxa-labels.t line 21.
# Looks like your test died before it could output anything.
dubious
Test returned status 255 (wstat 65280, 0xff00)
t/nexus_wrong_format....................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/arch /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl .) at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/nexus_wrong_format.t line 20.
BEGIN failed--compilation aborted at t/nexus_wrong_format.t line 20.
# Looks like your test died before it could output anything.
dubious
Test returned status 255 (wstat 65280, 0xff00)
t/nhxcmd_parsing........................ok
t/notesblock_methods....................skipped
all skipped: The notes block implementation is not complete
t/tree_equals...........................ok
t/tree_methods-01.......................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/arch /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl .) at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/tree_methods-01.t line 18.
BEGIN failed--compilation aborted at t/tree_methods-01.t line 18.
# Looks like your test died before it could output anything.
dubious
Test returned status 255 (wstat 65280, 0xff00)
t/tree_methods-02.......................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/arch /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl .) at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/tree_methods-02.t line 18.
BEGIN failed--compilation aborted at t/tree_methods-02.t line 18.
# Looks like your test died before it could output anything.
dubious
Test returned status 255 (wstat 65280, 0xff00)
t/tree_parsing..........................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/arch /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl .) at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/tree_parsing.t line 19.
BEGIN failed--compilation aborted at t/tree_parsing.t line 19.
# Looks like your test died before it could output anything.
dubious
Test returned status 255 (wstat 65280, 0xff00)
t/tree_support-values...................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: ../lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/arch /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl .) at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/tree_support-values.t line 18.
BEGIN failed--compilation aborted at t/tree_support-values.t line 18.
# Looks like your test died before it could output anything.
dubious
Test returned status 255 (wstat 65280, 0xff00)
t/treesblock_methods....................ok
1/37 skipped: various reasons
t/uncat_clone_methods...................skipped
all skipped: Clone::PP not installed
t/uncat_datablock_clustalw..............ok
t/uncat_equals_methods..................ok
3/13 skipped: various reasons
t/uncat_excessive_whitespace............ok
t/uncat_ntax-nchar-dimensions...........ok
1/4 unexpectedly succeeded
TODO PASSED test 3
t/uncat_object-file-equality............ok
t/uncat_shared-commands.................ok
3/5 skipped: various reasons
t/uncat_todo............................Can't locate Bio/NEXUS/Util/Exceptions.pm in @INC (@INC contains: /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/arch /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl . /home/cpan/perl583/lib/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/5.8.3 /home/cpan/perl583/lib/site_perl/5.8.3/i386-netbsd-thread-multi-64int /home/cpan/perl583/lib/site_perl/5.8.3 /home/cpan/perl583/lib/site_perl .) at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS/Functions.pm line 42.
Compilation failed in require at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
BEGIN failed--compilation aborted at /home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib/Bio/NEXUS.pm line 49.
Compilation failed in require at t/uncat_todo.t line 19.
BEGIN failed--compilation aborted at t/uncat_todo.t line 19.
# Looks like your test died before it could output anything.
dubious
Test returned status 255 (wstat 65280, 0xff00)
t/uncat_write...........................ok
Failed Test Stat Wstat Total Fail List of Failed
-------------------------------------------------------------------------------
t/_perl_module-loading.t 255 65280 ?? ?? ??
t/nexus_add-otu-clone.t 255 65280 3 0 ??
t/nexus_taxa-labels-quoted.t 255 65280 ?? ?? ??
t/nexus_taxa-labels-squarebrackets.t 255 65280 ?? ?? ??
t/nexus_taxa-labels.t 255 65280 ?? ?? ??
t/nexus_wrong_format.t 255 65280 ?? ?? ??
t/tree_methods-01.t 255 65280 ?? ?? ??
t/tree_methods-02.t 255 65280 ?? ?? ??
t/tree_parsing.t 255 65280 ?? ?? ??
t/tree_support-values.t 255 65280 ?? ?? ??
t/uncat_todo.t 255 65280 ?? ?? ??
(1 subtest UNEXPECTEDLY SUCCEEDED), 4 tests and 7 subtests skipped.
Failed 11/35 test scripts. 0/231 subtests failed.
Files=35, Tests=231, 13 wallclock secs (11.11 cusr + 1.10 csys = 12.21 CPU)
Failed 11/35 test programs. 0/231 subtests failed.
gmake:
[MSG] [Thu Apr 24 06:34:00 2008] DEFAULT 'proceed_on_test_failure' HANDLER RETURNING 'sub return value'
MISSING PREREQUISITES:
It was observed that the test suite seem to fail without these modules:
Bio::NEXUS::Util::Exceptions
Clone::PP
As such, adding the prerequisite module(s) to 'PREREQ_PM' in your
Makefile.PL should solve this problem. For example:
WriteMakefile(
AUTHOR => 'TJHLADISH (cpanplus-info@lists.sf.net)',
... # other information
PREREQ_PM => {
'Bio::NEXUS::Util::Exceptions' => '0', # or a minimum working version
'Clone::PP' => '0', # or a minimum working version
}
);
If you are interested in making a more flexible Makefile.PL that can
probe for missing dependencies and install them, ExtUtils::AutoInstall
at <http://search.cpan.org/dist/ExtUtils-AutoInstall/> may be
worth a look.
Thanks! :-)
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
Test::More 0.70 0
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPAN::YACSmoke 0.0307.
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
PATH = /home/cpan/bin:/bin:/sbin:/usr/bin:/usr/sbin:/usr/X11R6/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/bin:/usr/local/sbin
PERL5LIB = :/home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/lib:/home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib/arch:/home/cpan/perl583/.cpanplus/5.8.3/build/Bio-NEXUS-0.69/blib
PERL5_CPANPLUS_IS_RUNNING = 18271
PERL5_CPANPLUS_IS_VERSION = 0.80
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/pkg/bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /home/cpan/perl583/bin/perl
UID: $< = 1002
EUID: $> = 1002
GID: $( = 100 100
EGID: $) = 100 100
-------------------------------
--
Summary of my perl5 (revision 5.0 version 8 subversion 3) configuration:
Platform:
osname=netbsd, osvers=3.1, archname=i386-netbsd-thread-multi-64int
uname='netbsd canker.bingosnet.co.uk 3.1 netbsd 3.1 (generic_laptop) #0: tue oct 31 04:32:05 utc 2006 builds@b0.netbsd.org:homebuildsabnetbsd-3-1-releasei386200610302053z-objhomebuildsabnetbsd-3-1-releasesrcsysarchi386compilegeneric_laptop i386 '
config_args=''
hint=recommended, useposix=true, d_sigaction=define
usethreads=define use5005threads=undef useithreads=define usemultiplicity=define
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=undef uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -I/usr/pkg/include',
optimize='-O',
cppflags='-fno-strict-aliasing -I/usr/pkg/include'
ccversion='', gccversion='3.3.3 (NetBSD nb3 20040520)', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -Wl,-rpath,/usr/pkg/lib -Wl,-rpath,/usr/local/lib -L/usr/pkg/lib'
libpth=/usr/pkg/lib /lib /usr/lib
libs=-lgdbm -lm -lcrypt -lutil -lc -lposix -lpthread
perllibs=-lm -lcrypt -lutil -lc -lposix -lpthread
libc=/lib/libc.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E '
cccdlflags='-DPIC -fPIC ', lddlflags='--whole-archive -shared -L/usr/pkg/lib'
Thread Previous
|
Thread Next