FAIL Bio-NEXUS-0.69b i686-linux-thread-multi-64int 2.6.22-1-k7

This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible.  See
http://testers.cpan.org/


--
Dear Thomas Hladish,
    
This is a computer-generated report for Bio-NEXUS-0.69b
on perl 5.10.0 patch 33412, created by CPAN-Reporter-1.1404. 

Thank you for uploading your work to CPAN.  However, there was a problem
testing your distribution.

If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:

http://cpantest.grango.org/wiki/CPANAuthorNotes

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester: 

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 /home/src/perl/repoperls/installed-perls/maint-5.10/piB7lpk/perl-5.10.0@33412/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/_perl_module-loading....................ok
t/_perl_perlpod...........................ok
t/_perl_podcoverage.......................ok
t/assumptionsblock_options................ok
t/assumptionsblock_wtset-scores...........ok
t/block_link-and-title....................ok
t/charactersblock_methods-01..............ok
t/charactersblock_methods-02..............ok
t/matrix_character-state-frequency........ok
t/matrix_charactersblock-interleave.......ok
t/matrix_historyblock-probab-distrib......ok
t/matrix_polymorphic-and-uncertain........ok
t/nexus_add-otu-clone.....................WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 797] - not fully implemented!
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 797] - not fully implemented!
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
WARN Bio::NEXUS::add_otu_clone [$PREFIX/Bio/NEXUS.pm, 797] - not fully implemented!
Undefined subroutine &main::set called at t/nexus_add-otu-clone.t line 59.
# Looks like your test died just after 4.
 Dubious, test returned 255 (wstat 65280, 0xff00)
 All 4 subtests passed 
t/nexus_block-level-commands..............ok
t/nexus_taxa-labels-quoted................ok
t/nexus_taxa-labels-squarebrackets........ok
t/nexus_taxa-labels.......................ok
t/nexus_wrong_format......................Use of uninitialized value $_ in concatenation (.) or string at /home/sand/.cpan/build/Bio-NEXUS-0.69-23HQnO/blib/lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at /home/sand/.cpan/build/Bio-NEXUS-0.69-23HQnO/blib/lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at /home/sand/.cpan/build/Bio-NEXUS-0.69-23HQnO/blib/lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at /home/sand/.cpan/build/Bio-NEXUS-0.69-23HQnO/blib/lib/Bio/NEXUS/Util/Exceptions.pm line 64.
ok
t/nhxcmd_parsing..........................ok
t/notesblock_methods......................skipped: The notes block implementation is not complete
t/tree_equals.............................ok
t/tree_methods-01.........................ok
t/tree_methods-02.........................ok
t/tree_parsing............................ok
t/tree_support-values.....................ok
t/treesblock_methods......................Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
ok
t/uncat_clone_methods.....................ok
t/uncat_datablock_clustalw................ok
t/uncat_equals_methods....................ok
t/uncat_excessive_whitespace..............ok
t/uncat_ntax-nchar-dimensions.............Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
Use of uninitialized value $_ in concatenation (.) or string at lib/Bio/NEXUS/Util/Exceptions.pm line 64.
ok
t/uncat_object-file-equality..............ok
t/uncat_shared-commands...................ok
t/uncat_todo..............................ok
t/uncat_write.............................ok

Test Summary Report
-------------------
t/nexus_add-otu-clone.t               (Wstat: 65280 Tests: 4 Failed: 0)
  Non-zero exit status: 255
t/nexus_wrong_format.t                (Wstat: 0 Tests: 1 Failed: 0)
  TODO passed:   1
t/uncat_ntax-nchar-dimensions.t       (Wstat: 0 Tests: 4 Failed: 0)
  TODO passed:   3
Files=35, Tests=492, 10 wallclock secs ( 0.38 usr  0.07 sys +  8.49 cusr  0.85 csys =  9.79 CPU)
Result: FAIL
Failed 1/35 test programs. 0/492 subtests failed.
make: *** [test_dynamic] Fehler 255

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module     Need Have
    ---------- ---- ----
    Test::More 0    0.80

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    LANG = de_DE.UTF-8
    PATH = /usr/lib/ccache:/home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
    PERL5LIB = 
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 24705
    PERL5_CPAN_IS_RUNNING = 24705
    PERL_MM_USE_DEFAULT = 1
    SHELL = /usr/bin/zsh
    TERM = screen

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /home/src/perl/repoperls/installed-perls/maint-5.10/piB7lpk/perl-5.10.0@33412/bin/perl
    $UID/$EUID = 1005 / 1005
    $GID = 1005 1005
    $EGID = 1005 1005

Perl module toolchain versions installed:

    Module              Have     
    ------------------- ---------
    CPAN                1.92_60  
    Cwd                 3.2701   
    ExtUtils::CBuilder  0.23     
    ExtUtils::Command   1.14     
    ExtUtils::Install   1.50     
    ExtUtils::MakeMaker 6.44     
    ExtUtils::Manifest  1.51_01  
    ExtUtils::ParseXS   2.18_02  
    File::Spec          3.2701   
    Module::Build       0.2808_01
    Module::Signature   0.55     
    Test::Harness       3.10     
    Test::More          0.80     
    YAML                0.66     
    YAML::Syck          1.04     
    version             0.74     


--

Summary of my perl5 (revision 5 version 10 subversion 0 patch 33412) configuration:
  Platform:
    osname=linux, osvers=2.6.22-1-k7, archname=i686-linux-thread-multi-64int
    uname='linux k75 2.6.22-1-k7 #1 smp sun jul 29 15:15:55 utc 2007 i686 gnulinux '
    config_args='-Dprefix=/home/src/perl/repoperls/installed-perls/maint-5.10/piB7lpk/perl-5.10.0@33412 -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Dusethreads -Duse64bitint'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=define, usemultiplicity=define
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=define, use64bitall=undef, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
    optimize='-O2',
    cppflags='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -I/usr/local/include'
    ccversion='', gccversion='4.1.2 20061115 (prerelease) (Debian 4.1.1-21)', gccosandvers=''
    intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
    ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=4, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -L/usr/local/lib'
    libpth=/usr/local/lib /lib /usr/lib /usr/lib64
    libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lpthread -lc
    perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
    libc=/lib/libc-2.7.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version='2.7'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
    cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib'

• FAIL Bio-NEXUS-0.69b i686-linux-thread-multi-64int 2.6.22-1-k7 by andreas.koenig.gmwojprw