PASS Bio-Grep-0.10.3 i386-freebsd-64int 7.0-release

This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible.  See
http://testers.cpan.org/

Please cc any replies to cpan-testers@perl.org to keep other
test volunteers informed and to prevent any duplicate effort.

--
Dear Markus Riester,
    
This is a computer-generated report for Bio-Grep-0.10.3
on perl 5.8.8, created by CPAN-Reporter-1.13. 

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester: 

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00.checkprereq................# 
# *****************************************************************************
# * Bioperl    : NOT FOUND                                                    *
# * Bioperl-run: NOT FOUND                                                    *
# * Backend    : No backend found in path. You should install the back-ends   *
# *              before running these tests. This way you make sure that the  *
# *              parsers work with your installed version of the back-end.    *
# * EMBOSS     : NOT FOUND                                                    *
# *****************************************************************************
ok
t/00.load.......................skipped: Bioperl not found
t/10.backends.all...............skipped: Bioperl not found
t/11.backends.guugle............skipped: guugle not in path
t/11.backends.re................skipped: Bioperl not found
t/20.filter.....................skipped: Bioperl not found
t/30.features.alignments........skipped: Bioperl not found
t/30.features.updownstream......skipped: Bioperl not found
t/40.utils......................skipped: Bioperl not found
t/50.synopsis...................skipped: Bioperl not found
t/perlcritic....................skipped: Author test.  Set $ENV{TEST_AUTHOR} to a true value to run.
t/pod-coverage..................skipped: Test::Pod::Coverage 1.04 required for testing POD coverage
t/pod...........................skipped: Test::Pod 1.14 required for testing POD
All tests successful.
Files=13, Tests=1,  8 wallclock secs ( 0.28 usr  0.66 sys +  1.68 cusr  3.00 csys =  5.62 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module               Need Have
    -------------------- ---- ----
  ! Bio::AlignIO         0    n/a 
  ! Bio::Factory::EMBOSS 0    n/a 
  ! Bio::Index::Fasta    0    n/a 
  ! Bio::Root::Root      0    n/a 
  ! Bio::Root::Version   0    n/a 
  ! Bio::Seq             0    n/a 
  ! Bio::SeqIO           0    n/a 
    Carp::Assert         0    0.20
    Class::MethodMaker   2.02 2.11
    Getopt::Long         2.32 2.35
    IO::String           1    1.08
    IPC::Open3           0    1.02
    Pod::Usage           0    1.33
  ! ToolSet              0.13 n/a 
  ! UNIVERSAL::require   0.11 n/a 
    version              0    0.74

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    PATH = /sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
    PERL5LIB = /usr/local/lib/perl5/5.8.8
    PERL5OPT = -MCPAN::PERL5INC=yaml_module,YAML::Syck,tempfile,/tmp/cpan_perl5inc_XNbf.txt
    PERL5_CPANPLUS_IS_RUNNING = 75396
    PERL5_CPAN_IS_RUNNING = 75396
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 22952,75396
    PERL_CR_SMOKER_CURRENT = Bio-Grep-0.10.3
    PERL_MM_USE_DEFAULT = 1
    SHELL = /bin/csh
    TERM = cons25

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /usr/bin/perl
    $UID/$EUID = 0 / 0
    $GID = 0 5 0 0
    $EGID = 0 5 0 0

Perl module toolchain versions installed:

    Module              Have   
    ------------------- -------
    CPAN                1.92_60
    Cwd                 3.2701 
    ExtUtils::CBuilder  0.22   
    ExtUtils::Command   1.13   
    ExtUtils::Install   1.45   
    ExtUtils::MakeMaker 6.44   
    ExtUtils::Manifest  1.51   
    ExtUtils::ParseXS   2.19   
    File::Spec          3.2701 
    Module::Build       0.2808 
    Module::Signature   n/a    
    Test::Harness       3.10   
    Test::More          0.62   
    YAML                0.66   
    YAML::Syck          1.04   
    version             0.74   


--

Summary of my perl5 (revision 5 version 8 subversion 8) configuration:
  Platform:
    osname=freebsd, osvers=7.0-release, archname=i386-freebsd-64int
    uname='freebsd freebsd.org 7.0-release freebsd 7.0-release #0: fri dec 7 15:51:05 pst 2007 kris@freebsd.org:usrsrcsysmagickernelpath i386 '
    config_args='-sde -Dprefix=/usr/local -Darchlib=/usr/local/lib/perl5/5.8.8/mach -Dprivlib=/usr/local/lib/perl5/5.8.8 -Dman3dir=/usr/local/lib/perl5/5.8.8/perl/man/man3 -Dman1dir=/usr/local/man/man1 -Dsitearch=/usr/local/lib/perl5/site_perl/5.8.8/mach -Dsitelib=/usr/local/lib/perl5/site_perl/5.8.8 -Dscriptdir=/usr/local/bin -Dsiteman3dir=/usr/local/lib/perl5/5.8.8/man/man3 -Dsiteman1dir=/usr/local/man/man1 -Ui_malloc -Ui_iconv -Uinstallusrbinperl -Dcc=cc -Duseshrplib -Dccflags=-DAPPLLIB_EXP="/usr/local/lib/perl5/5.8.8/BSDPAN" -Doptimize=-O2 -fno-strict-aliasing -pipe  -Ud_dosuid -Ui_gdbm -Dusethreads=n -Dusemymalloc=y -Duse64bitint'
    hint=recommended, useposix=true, d_sigaction=define
    usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef
    useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
    use64bitint=define use64bitall=undef uselongdouble=undef
    usemymalloc=y, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-DAPPLLIB_EXP="/usr/local/lib/perl5/5.8.8/BSDPAN" -DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include',
    optimize='-O2 -fno-strict-aliasing -pipe ',
    cppflags='-DAPPLLIB_EXP="/usr/local/lib/perl5/5.8.8/BSDPAN" -DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include'
    ccversion='', gccversion='4.2.1 20070719  [FreeBSD]', gccosandvers=''
    intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
    ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=4, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -Wl,-E -L/usr/local/lib'
    libpth=/usr/lib /usr/local/lib
    libs=-lm -lcrypt -lutil
    perllibs=-lm -lcrypt -lutil
    libc=, so=so, useshrplib=true, libperl=libperl.so
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='  -Wl,-R/usr/local/lib/perl5/5.8.8/mach/CORE'
    cccdlflags='-DPIC -fPIC', lddlflags='-shared  -L/usr/local/lib'

• PASS Bio-Grep-0.10.3 i386-freebsd-64int 7.0-release by stro