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PASS Bio-Grep-0.10.3 alpha-netbsd 2.1.0_stable

From:
david
Date:
April 18, 2008 07:26
Subject:
PASS Bio-Grep-0.10.3 alpha-netbsd 2.1.0_stable
This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible.  See
http://testers.cpan.org/


--
Dear Markus Riester,
    
This is a computer-generated report for Bio-Grep-0.10.3
on perl 5.10.0, created by CPAN-Reporter-1.1404. 

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester: 

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from './Build test':

t/00.checkprereq..............# 
# *****************************************************************************
# * Bioperl    : NOT FOUND                                                    *
# * Bioperl-run: NOT FOUND                                                    *
# * Backend    : No backend found in path. You should install the back-ends   *
# *              before running these tests. This way you make sure that the  *
# *              parsers work with your installed version of the back-end.    *
# * EMBOSS     : NOT FOUND                                                    *
# *****************************************************************************
ok
t/00.load.....................skipped
        all skipped: Bioperl not found
t/10.backends.all.............skipped
        all skipped: Bioperl not found
t/11.backends.guugle..........skipped
        all skipped: guugle not in path
t/11.backends.re..............skipped
        all skipped: Bioperl not found
t/20.filter...................skipped
        all skipped: Bioperl not found
t/30.features.alignments......skipped
        all skipped: Bioperl not found
t/30.features.updownstream....skipped
        all skipped: Bioperl not found
t/40.utils....................skipped
        all skipped: Bioperl not found
t/50.synopsis.................skipped
        all skipped: Bioperl not found
t/perlcritic..................skipped
        all skipped: Author test.  Set $ENV{TEST_AUTHOR} to a true value to run.
t/pod-coverage................skipped
        all skipped: Test::Pod::Coverage 1.04 required for testing POD coverage
t/pod.........................skipped
        all skipped: Test::Pod 1.14 required for testing POD
All tests successful, 12 tests skipped.
Files=13, Tests=1,  3 wallclock secs ( 2.18 cusr +  0.30 csys =  2.48 CPU)

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module               Need  Have    
    -------------------- ----- --------
  ! Bio::AlignIO         0     n/a     
  ! Bio::Factory::EMBOSS 0     n/a     
  ! Bio::Index::Fasta    0     n/a     
  ! Bio::Root::Root      0     n/a     
  ! Bio::Root::Version   0     n/a     
  ! Bio::Seq             0     n/a     
  ! Bio::SeqIO           0     n/a     
    Carp::Assert         0     0.20    
    Class::MethodMaker   2.02  2.11    
    Getopt::Long         2.32  2.37    
    IO::String           1     1.08    
    IPC::Open3           0     1.02    
    perl                 5.8.1 5.010000
    Pod::Usage           0     1.35    
    ToolSet              0.13  0.13    
    UNIVERSAL::require   0.11  0.11    
    version              0     0.74    

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    PATH = /usr/bin:/bin:/usr/pkg/bin:/usr/local/bin
    PERL5LIB = 
    PERL5_CPANPLUS_IS_RUNNING = 28378
    PERL5_CPAN_IS_RUNNING = 28378
    SHELL = /usr/pkg/bin/bash
    TERM = screen

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /tmp/drhyde/perl-5.10.0/bin/perl
    $UID/$EUID = 40631 / 40631
    $GID = 500 500 600 900
    $EGID = 500 500 600 900

Perl module toolchain versions installed:

    Module              Have     
    ------------------- ---------
    CPAN                1.9205   
    Cwd                 3.2701   
    ExtUtils::CBuilder  0.21     
    ExtUtils::Command   1.13     
    ExtUtils::Install   1.44     
    ExtUtils::MakeMaker 6.42     
    ExtUtils::Manifest  1.51_01  
    ExtUtils::ParseXS   2.18_02  
    File::Spec          3.2701   
    Module::Build       0.2808_01
    Module::Signature   n/a      
    Test::Harness       2.64     
    Test::More          0.80     
    YAML                0.66     
    YAML::Syck          n/a      
    version             0.74     


--

Summary of my perl5 (revision 5 version 10 subversion 0) configuration:
  Platform:
    osname=netbsd, osvers=2.1.0_stable, archname=alpha-netbsd
    uname='netbsd sverige 2.1.0_stable netbsd 2.1.0_stable (sdf) #0: tue sep 4 06:27:41 utc 2007 root@ol:varsrc-2.1archalphacompilesdf alpha '
    config_args='-de -Dprefix=/tmp/drhyde/perl-5.10.0'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=undef, usemultiplicity=undef
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-fno-strict-aliasing -pipe -I/usr/pkg/include',
    optimize='-O',
    cppflags='-fno-strict-aliasing -pipe -I/usr/pkg/include'
    ccversion='', gccversion='3.3.3 (NetBSD nb3 20040520)', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=8
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -Wl,-rpath,/usr/pkg/lib -Wl,-rpath,/usr/local/lib -L/usr/pkg/lib'
    libpth=/usr/pkg/lib /lib /usr/lib
    libs=-lbind -lgdbm -lm -lcrypt -lutil -lc -lposix
    perllibs=-lbind -lm -lcrypt -lutil -lc -lposix
    libc=/lib/libc.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E '
    cccdlflags='-DPIC -fPIC ', lddlflags='--whole-archive -shared  -L/usr/pkg/lib'



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