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PASS Bio-Grep-0.10.3 x86_64-linux-thread-multi-ld 2.6.22.10

From:
imacat
Date:
April 18, 2008 01:54
Subject:
PASS Bio-Grep-0.10.3 x86_64-linux-thread-multi-ld 2.6.22.10
This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible.  See
http://testers.cpan.org/

Please cc any replies to cpan-testers@perl.org to keep other
test volunteers informed and to prevent any duplicate effort.

--
Dear Markus Riester,
    
This is a computer-generated report for Bio-Grep-0.10.3
on perl 5.10.0, created by CPAN-Reporter-1.13. 

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester: 

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from './Build test':

t/00.checkprereq................# 
# *****************************************************************************
# * Bioperl    : NOT FOUND                                                    *
# * Bioperl-run: NOT FOUND                                                    *
# * Backend    : No backend found in path. You should install the back-ends   *
# *              before running these tests. This way you make sure that the  *
# *              parsers work with your installed version of the back-end.    *
# * EMBOSS     : NOT FOUND                                                    *
# *****************************************************************************
ok
t/00.load.......................skipped: Bioperl not found
t/10.backends.all...............skipped: Bioperl not found
t/11.backends.guugle............skipped: guugle not in path
t/11.backends.re................skipped: Bioperl not found
t/20.filter.....................skipped: Bioperl not found
t/30.features.alignments........skipped: Bioperl not found
t/30.features.updownstream......skipped: Bioperl not found
t/40.utils......................skipped: Bioperl not found
t/50.synopsis...................skipped: Bioperl not found
t/perlcritic....................skipped: Author test.  Set $ENV{TEST_AUTHOR} to a true value to run.
t/pod-coverage..................skipped: Test::Pod::Coverage 1.04 required for testing POD coverage
t/pod...........................skipped: Test::Pod 1.14 required for testing POD
All tests successful.
Files=13, Tests=1,  1 wallclock secs ( 0.01 usr  0.00 sys +  0.54 cusr  0.20 csys =  0.75 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module               Need  Have    
    -------------------- ----- --------
  ! Bio::AlignIO         0     n/a     
  ! Bio::Factory::EMBOSS 0     n/a     
  ! Bio::Index::Fasta    0     n/a     
  ! Bio::Root::Root      0     n/a     
  ! Bio::Root::Version   0     n/a     
  ! Bio::Seq             0     n/a     
  ! Bio::SeqIO           0     n/a     
    Carp::Assert         0     0.20    
    Class::MethodMaker   2.02  2.11    
    Getopt::Long         2.32  2.37    
    IO::String           1     1.08    
    IPC::Open3           0     1.02    
    perl                 5.8.1 5.010000
    Pod::Usage           0     1.35    
    ToolSet              0.13  0.13    
    UNIVERSAL::require   0.11  0.11    
    version              0     0.74    

------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    LANG = zh_TW
    LANGUAGE = zh_TW
    LC_ALL = zh_TW
    LC_COLLATE = zh_TW
    LC_CTYPE = zh_TW
    LC_MESSAGES = zh_TW
    LC_MONETARY = zh_TW
    LC_NUMERIC = zh_TW
    LC_TIME = zh_TW
    PATH = /home/imacat/bin:/bin:/usr/bin:/opt/java/bin:/usr/local/bin
    PERL5LIB = /opt/perl/testers/5.10.0/.cpan/build/build/UNIVERSAL-require-0.11-sqTdNB/blib/arch:/opt/perl/testers/5.10.0/.cpan/build/build/UNIVERSAL-require-0.11-sqTdNB/blib/lib:/opt/perl/testers/5.10.0/.cpan/build/build/ToolSet-0.13-Il6vdO/blib/arch:/opt/perl/testers/5.10.0/.cpan/build/build/ToolSet-0.13-Il6vdO/blib/lib:/opt/perl/testers/5.10.0/.cpan/build/build/IO-stringy-2.110-2Dov9K/blib/arch:/opt/perl/testers/5.10.0/.cpan/build/build/IO-stringy-2.110-2Dov9K/blib/lib:/opt/perl/testers/5.10.0/.cpan/build/build/Carp-Assert-0.20-FDJRzq/blib/arch:/opt/perl/testers/5.10.0/.cpan/build/build/Carp-Assert-0.20-FDJRzq/blib/lib:/opt/perl/testers/5.10.0/.cpan/build/build/IO-String-1.08-yTlU6n/blib/arch:/opt/perl/testers/5.10.0/.cpan/build/build/IO-String-1.08-yTlU6n/blib/lib:/opt/perl/testers/5.10.0/.cpan/build/build/Class-MethodMaker-2.11-vKuXAs/blib/arch:/opt/perl/testers/5.10.0/.cpan/build/build/Class-MethodMaker-2.11-vKuXAs/blib/lib:/home/imacat/lib/perl5
    PERL5_CPANPLUS_IS_RUNNING = 29997
    PERL5_CPAN_IS_RUNNING = 29997
    PERL_CPAN_REPORTER_DIR = /home/imacat/.cpanreporter
    PERL_MM_USE_DEFAULT = 1
    SHELL = /bin/zsh
    TERM = xterm
    TMPDIR = /opt/perl/testers/5.10.0/.cpan/build/home/tmp

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /opt/perl/testers/5.10.0/bin/perl
    $UID/$EUID = 1000 / 1000
    $GID = 100 0 4 6 20 24 25 29 34 38 40 44 46 50 100 104 1000
    $EGID = 100 0 4 6 20 24 25 29 34 38 40 44 46 50 100 104 1000

Perl module toolchain versions installed:

    Module              Have     
    ------------------- ---------
    CPAN                1.9205   
    Cwd                 3.2701   
    ExtUtils::CBuilder  0.22     
    ExtUtils::Command   1.14     
    ExtUtils::Install   1.50     
    ExtUtils::MakeMaker 6.44     
    ExtUtils::Manifest  1.51_01  
    ExtUtils::ParseXS   2.19     
    File::Spec          3.2701   
    Module::Build       0.2808_01
    Module::Signature   0.55     
    Test::Harness       3.10     
    Test::More          0.80     
    YAML                0.66     
    YAML::Syck          n/a      
    version             0.74     


--

Summary of my perl5 (revision 5 version 10 subversion 0) configuration:
  Platform:
    osname=linux, osvers=2.6.22.10, archname=x86_64-linux-thread-multi-ld
    uname='linux rinse 2.6.22.10 #1 smp tue nov 20 02:36:22 cst 2007 x86_64 gnulinux '
    config_args='-d -Dprefix=/opt/perl/testers/5.10.0 -Dusethreads -Dcc=gcc -Duselongdouble -Doptimize=-g -O3 -Dd_dosuid -Dinc_version_list=none -Duseshrplib=true -Dcf_email=imacat@mail.imacat.idv.tw'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=define, usemultiplicity=define
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=define, use64bitall=define, uselongdouble=define
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='gcc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
    optimize='-g -O3',
    cppflags='-D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include'
    ccversion='', gccversion='4.1.2 20061115 (prerelease) (Debian 4.1.1-21)', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
    ivtype='long', ivsize=8, nvtype='long double', nvsize=16, Off_t='off_t', lseeksize=8
    alignbytes=16, prototype=define
  Linker and Libraries:
    ld='gcc', ldflags =' -L/usr/local/lib'
    libpth=/usr/local/lib /lib /usr/lib /lib64 /usr/lib64
    libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lpthread -lc
    perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
    libc=/lib/libc-2.3.6.so, so=so, useshrplib=true, libperl=libperl.so
    gnulibc_version='2.3.6'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E -Wl,-rpath,/opt/perl/testers/5.10.0/lib/5.10.0/x86_64-linux-thread-multi-ld/CORE'
    cccdlflags='-fPIC', lddlflags='-shared -g -O3 -L/usr/local/lib'



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