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FAIL bioperl-1.4 x86_64-linux 2.6.23.1-slh64-smp-32
From:
DEVOGON
Date:
March 11, 2008 10:37
Subject:
FAIL bioperl-1.4 x86_64-linux 2.6.23.1-slh64-smp-32
This distribution has been tested as part of the cpan-testers
effort to test as many new uploads to CPAN as possible. See
http://testers.cpan.org/
Please cc any replies to cpan-testers@perl.org to keep other
test volunteers informed and to prevent any duplicate effort.
--
Dear Ewan Birney,
This is a computer-generated report for bioperl-1.4
on perl 5.10.0, created by CPAN-Reporter-1.11.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://cpantest.grango.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 /usr/local/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/AAChange.....................ok
t/AAReverseMutate..............ok
t/AlignIO......................ok
t/AlignStats...................ok
t/Allele.......................ok
t/Alphabet.....................ok
t/Annotation...................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/AnnotationAdaptor............ok
t/Assembly.....................ok
t/Biblio.......................Subroutine LWP::UserAgent::redirect_ok redefined at /usr/local/lib/perl5/site_perl/5.10.0/SOAP/Transport/HTTP.pm line 41.
Subroutine LWP::Protocol::collect redefined at /usr/local/lib/perl5/site_perl/5.10.0/SOAP/Transport/HTTP.pm line 59.
ok
t/Biblio_biofetch..............ok
t/BiblioReferences.............ok
t/BioDBGFF.....................ok
t/BioFetch_DB.................. Failed 4/27 subtests
t/BioGraphics..................GD or Text::Shellwords modules are not installed. This means that Bio::Graphics module is unusable. Skipping tests.
ok
t/BlastIndex...................ok
t/BPbl2seq.....................ok
t/BPlite.......................ok
t/BPpsilite....................ok
t/Chain........................ok
t/cigarstring..................ok
t/ClusterIO....................XML::Parser::PerlSAX not loaded. This means ClusterIO::dbsnp test cannot be executed. Skipping
ok
t/Coalescent...................ok
t/CodonTable...................ok
t/consed.......................ok
t/CoordinateGraph..............ok
t/CoordinateMapper.............ok
t/Correlate....................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/CytoMap......................ok
t/DB........................... Failed 2/78 subtests
(less 1 skipped subtest: 75 okay)
t/DBCUTG.......................ok
t/DBFasta......................ok
t/DNAMutation..................ok
t/Domcut.......................ok
t/ECnumber.....................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/ELM..........................
-------------------- WARNING ---------------------
MSG: Bio::Tools::Analysis::Protein::ELM Request Error:
400 URL must be absolute
Content-Type: text/plain
Client-Date: Tue, 11 Mar 2008 17:32:14 GMT
Client-Warning: Internal response
400 URL must be absolute
---------------------------------------------------
ok
t/EMBL_DB...................... Failed 3/15 subtests
t/EMBOSS_Tools.................ok
t/EncodedSeq...................ok
t/ePCR.........................ok
t/ESEfinder....................ok
t/est2genome...................ok
t/Exception....................ok
t/Exonerate....................ok
t/flat.........................ok
t/FootPrinter..................ok
t/game.........................XML::Parser::PerlSAX not loaded. This means game test cannot be executed. Skipping
ok
t/GDB..........................ok
t/GeneCoordinateMapper.........
-------------------- WARNING ---------------------
MSG: sorted sublocation array requested but root location doesn't define seq_id (at least one sublocation does!)
---------------------------------------------------
-------------------- WARNING ---------------------
MSG: sorted sublocation array requested but root location doesn't define seq_id (at least one sublocation does!)
---------------------------------------------------
Use of uninitialized value in concatenation (.) or string at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Coordinate/GeneMapper.pm line 814.
ok
t/Geneid.......................ok
t/Genewise.....................ok
t/Genomewise...................ok
t/Genpred......................ok
t/GFF..........................Filehandle GEN0 opened only for output at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/IO.pm line 440.
Filehandle GEN1 opened only for output at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/IO.pm line 440.
ok
t/GOR4.........................ok
t/GOterm.......................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/GuessSeqFormat...............Bio::SeqIO: game cannot be found
Exception
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Failed to load module Bio::SeqIO::game. Can't locate XML/Parser/PerlSAX.pm in @INC (@INC contains: t .. /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/arch /usr/local/lib/perl5/5.10.0/x86_64-linux /usr/local/lib/perl5/5.10.0 /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux /usr/local/lib/perl5/site_perl/5.10.0 .) at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/SeqIO/game/gameSubs.pm line 70.
BEGIN failed--compilation aborted at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/SeqIO/game/gameSubs.pm line 70.
Compilation failed in require at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/SeqIO/game/gameHandler.pm line 62.
BEGIN failed--compilation aborted at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/SeqIO/game/gameHandler.pm line 62.
Compilation failed in require at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/SeqIO/game.pm line 76.
BEGIN failed--compilation aborted at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/SeqIO/game.pm line 76.
Compilation failed in require at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Root.pm line 394.
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Root.pm:328
STACK: Bio::Root::Root::_load_module /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Root.pm:396
STACK: Bio::SeqIO::_load_format_module /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/SeqIO.pm:549
STACK: Bio::SeqIO::new /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/SeqIO.pm:377
STACK: t/GuessSeqFormat.t:61
-----------------------------------------------------------
For more information about the SeqIO system please see the SeqIO docs.
This includes ways of checking for formats at compile time, not run time
Failed 1/46 subtests
t/hmmer........................ok
t/HNN..........................ok
t/Index........................ok
t/InstanceSite.................ok
t/InterProParser...............Bio::OntologyIO: InterProParser cannot be found
Exception
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Failed to load module Bio::OntologyIO::InterProParser. Can't locate XML/Parser/PerlSAX.pm in @INC (@INC contains: t .. . ./blib/lib /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/arch /usr/local/lib/perl5/5.10.0/x86_64-linux /usr/local/lib/perl5/5.10.0 /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux /usr/local/lib/perl5/site_perl/5.10.0) at Bio/OntologyIO/InterProParser.pm line 84.
BEGIN failed--compilation aborted at Bio/OntologyIO/InterProParser.pm line 84.
Compilation failed in require at Bio/Root/Root.pm line 394.
STACK: Error::throw
STACK: Bio::Root::Root::throw Bio/Root/Root.pm:328
STACK: Bio::Root::Root::_load_module Bio/Root/Root.pm:396
STACK: Bio::OntologyIO::_load_format_module Bio/OntologyIO.pm:255
STACK: Bio::OntologyIO::new Bio/OntologyIO.pm:165
STACK: t/InterProParser.t:52
-----------------------------------------------------------
For more information about the OntologyIO system please see the docs.
This includes ways of checking for formats at compile time, not run time
Can't call method "next_ontology" on an undefined value at t/InterProParser.t line 59.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 1/47 subtests
t/IUPAC........................ok
t/largefasta...................ok
t/largepseq....................ok
t/LinkageMap...................ok
t/LiveSeq......................ok
t/LocatableSeq.................ok
t/Location.....................ok
t/LocationFactory..............ok
t/LocusLink....................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/lucy.........................ok
t/Map..........................ok
t/MapIO........................ok
t/Matrix.......................ok
t/Measure......................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/MeSH.........................Use of uninitialized value $desc in substitution (s///) at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/DB/MeSH.pm line 263.
Use of uninitialized value $name in regexp compilation at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/DB/MeSH.pm line 277.
Use of uninitialized value $name in regexp compilation at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/DB/MeSH.pm line 277.
Failed 1/26 subtests
t/MetaSeq......................ok
t/MicrosatelliteMarker.........ok
t/MiniMIMentry.................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/MitoProt.....................ok
t/Molphy.......................ok
t/multiple_fasta...............ok
t/Mutation.....................ok
t/Mutator......................ok
t/NetPhos......................ok
t/Node.........................ok
t/OddCodes.....................ok
t/OMIMentry....................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/OMIMentryAllelicVariant......Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/OMIMparser...................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/Ontology.....................
Graph.pm doesn't seem to be installed on this system -- the GO Parser needs it...
ok
t/OntologyEngine...............Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/PAML.........................ok
t/Perl.........................Use of uninitialized value $au in substitution (s///) at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/SeqIO/swiss.pm line 855, <STREAM> line 43.
ok
t/phd..........................ok
t/Phenotype....................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/PhylipDist...................ok
t/pICalculator.................ok
t/Pictogram....................SVG not installed, skipping tests at t/Pictogram.t line 29.
ok
t/PopGen.......................ok
t/PopGenSims...................ok
t/primaryqual..................ok
t/PrimarySeq...................ok
t/primedseq....................ok
t/Primer.......................ok
t/primer3......................ok
t/Promoterwise.................ok
t/ProtDist.....................ok
t/psm..........................ok
t/QRNA.........................ok
t/qual.........................ok
t/RandDistFunctions............ok
t/RandomTreeFactory............ok
t/Range........................ok
t/RangeI.......................ok
t/RefSeq.......................ok
t/Registry.....................DB_File and BerkeleyDB not found. Skipping DB_File tests
ok
t/Relationship.................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/RelationshipType.............Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/RemoteBlast..................ok
t/RepeatMasker.................ok
t/RestrictionAnalysis..........ok
t/RestrictionEnzyme............ok
t/RestrictionIO................ok
t/RNAChange....................ok
t/RootI........................ok
t/RootIO.......................ok
t/RootStorable.................ok
t/Scansite.....................ok
t/scf..........................ok
t/SearchDist...................ok
t/SearchIO.....................XML::Parser::PerlSAX or HTML::Entities not loaded. This means SearchIO::blastxml test cannot be executed. Skipping
ok
t/Seq..........................ok
t/SeqAnalysisParser............ok
t/SeqBuilder...................ok
t/SeqDiff......................ok
t/SeqFeatCollection............ok
t/SeqFeature...................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/seqfeaturePrimer.............ok
t/SeqIO........................ok
t/SeqPattern...................ok
t/SeqStats.....................ok
t/SequenceFamily...............ok
t/sequencetrace................ok
t/SeqUtils.....................ok
t/seqwithquality...............ok
t/SeqWords.....................ok
t/Sigcleave....................ok
t/Sim4.........................ok
t/SimilarityPair...............ok
t/SimpleAlign..................ok
t/simpleGOparser...............
Graph.pm doesn't seem to be installed on this system -- the GO Parser needs it...
ok
t/sirna........................ok
t/SiteMatrix...................ok
t/SNP..........................ok
t/Sopma........................ok
t/Species......................ok
t/splicedseq...................ok
t/StandAloneBlast..............ok
t/StructIO.....................ok
t/Structure....................ok
t/Swiss........................ok
t/Symbol.......................ok
t/Taxonomy.....................ok
t/Tempfile.....................ok
t/Term.........................Useless localization of scalar assignment at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Object.pm line 699.
ok
t/Tools........................ok
t/Tree.........................ok
t/TreeIO.......................ok
t/trim.........................ok
t/tutorial.....................Use of uninitialized value $au in substitution (s///) at Bio/SeqIO/swiss.pm line 855, <STREAM> line 43.
Bio::SeqIO: game cannot be found
Exception
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Failed to load module Bio::SeqIO::game. Can't locate XML/Parser/PerlSAX.pm in @INC (@INC contains: . t /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/arch /usr/local/lib/perl5/5.10.0/x86_64-linux /usr/local/lib/perl5/5.10.0 /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux /usr/local/lib/perl5/site_perl/5.10.0) at Bio/SeqIO/game/gameSubs.pm line 70.
BEGIN failed--compilation aborted at Bio/SeqIO/game/gameSubs.pm line 70.
Compilation failed in require at Bio/SeqIO/game/gameHandler.pm line 62.
BEGIN failed--compilation aborted at Bio/SeqIO/game/gameHandler.pm line 62.
Compilation failed in require at Bio/SeqIO/game.pm line 76.
BEGIN failed--compilation aborted at Bio/SeqIO/game.pm line 76.
Compilation failed in require at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Root.pm line 394.
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Root.pm:328
STACK: Bio::Root::Root::_load_module /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/Root/Root.pm:396
STACK: Bio::SeqIO::_load_format_module /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/SeqIO.pm:549
STACK: Bio::SeqIO::new /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/Bio/SeqIO.pm:377
STACK: main::run_examples /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/bptutorial.pl:4027
STACK: t/tutorial.t:23
-----------------------------------------------------------
For more information about the SeqIO system please see the SeqIO docs.
This includes ways of checking for formats at compile time, not run time
Can't call method "next_seq" on an undefined value at /home/d/.cpan/build/bioperl-1.4-WF1UuS/blib/lib/bptutorial.pl line 4035.
Dubious, test returned 2 (wstat 512, 0x200)
Failed 3/21 subtests
t/UCSCParsers..................ok
t/Unflattener..................ok
t/Unflattener2.................ok
t/UniGene......................ok
t/Variation_IO.................
The XML-format conversion requires the CPAN modules XML::Twig, XML::Writer, and IO::String to be installed on your system, which they probably aren't. Skipping these tests.
ok
t/WABA.........................ok
t/XEMBL_DB.....................SOAP::Lite and/or XML::DOM not installed. This means that Bio::DB::XEMBL module is not usable. Skipping tests.
ok
Test Summary Report
-------------------
t/BioFetch_DB.t (Wstat: 0 Tests: 27 Failed: 4)
Failed tests: 8, 20-21, 27
t/DB.t (Wstat: 0 Tests: 78 Failed: 2)
Failed tests: 30-31
t/EMBL_DB.t (Wstat: 0 Tests: 15 Failed: 3)
Failed tests: 6, 13-14
t/GuessSeqFormat.t (Wstat: 0 Tests: 46 Failed: 1)
Failed test: 11
t/InterProParser.t (Wstat: 512 Tests: 47 Failed: 1)
Failed test: 2
Non-zero exit status: 2
t/MeSH.t (Wstat: 0 Tests: 26 Failed: 1)
Failed test: 26
t/tutorial.t (Wstat: 512 Tests: 18 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 21 tests but ran 18.
Files=179, Tests=8119, 160 wallclock secs ( 2.39 usr 0.63 sys + 80.78 cusr 5.80 csys = 89.60 CPU)
Result: FAIL
Failed 7/179 test programs. 12/8119 subtests failed.
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
-------------- ---- ------
DB_File 0 1.816
File::Spec 0 3.2701
File::Temp 0 0.20
HTML::Entities 0 1.35
IO::Scalar 0 2.110
IO::String 0 1.08
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_IE.UTF-8
LC_ADDRESS = en_IE.utf8
LC_COLLATE = POSIX
LC_CTYPE = en_IE.utf8
LC_IDENTIFICATION = en_IE.utf8
LC_MEASUREMENT = en_IE.utf8
LC_MESSAGES = en_IE.utf8
LC_MONETARY = nl_NL.utf8
LC_NAME = en_IE.utf8
LC_NUMERIC = en_IE.utf8
LC_PAPER = en_IE.utf8
LC_TELEPHONE = en_IE.utf8
LC_TIME = nl_NL.utf8
PATH = /home/d/bin:/home/devogon/lib/blead/bin:/home/devogon/lib/blead/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/home/devogon/bin:/usr/games/bin:/usr/bin/mh:/usr/local/everything/bin:/usr/lib/surfraw:/home/devogon/bin:/usr/games/bin:/usr/bin/mh:/usr/local/everything/bin:/usr/lib/surfraw
PERL5LIB =
PERL5_CPANPLUS_IS_RUNNING = 18148
PERL5_CPAN_IS_RUNNING = 18148
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 20814,18148
PERL_CR_SMOKER_CURRENT = Bio-Grep-v0.10.2
PERL_MM_USE_DEFAULT = 1
PERL_TEST_POD = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /usr/local/bin/perl
$UID/$EUID = 1004 / 1004
$GID = 1004 1004
$EGID = 1004 1004
Perl module toolchain versions installed:
Module Have
------------------- ---------
CPAN 1.92_57
Cwd 3.2701
ExtUtils::CBuilder 0.22
ExtUtils::Command 1.13
ExtUtils::Install 1.50
ExtUtils::MakeMaker 6.44
ExtUtils::Manifest 1.51_01
ExtUtils::ParseXS 2.19
File::Spec 3.2701
Module::Build 0.2808_01
Module::Signature 0.55
Test::Harness 3.10
Test::More 0.78
YAML 0.66
YAML::Syck 1.04
version 0.74
--
Summary of my perl5 (revision 5 version 10 subversion 0) configuration:
Platform:
osname=linux, osvers=2.6.23.1-slh64-smp-32, archname=x86_64-linux
uname='linux sanremo.defietser 2.6.23.1-slh64-smp-32 #1 smp preempt thu nov 15 17:55:06 cet 2007 x86_64 gnulinux '
config_args='-des'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -I/usr/local/include'
ccversion='', gccversion='4.2.3 20071014 (prerelease) (Debian 4.2.2-3)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib /lib64 /usr/lib64
libs=-lnsl -lgdbm -ldl -lm -lcrypt -lutil -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=/lib/libc-2.7.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.7'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib'
-
FAIL bioperl-1.4 x86_64-linux 2.6.23.1-slh64-smp-32
by DEVOGON